Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f15
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0039 - 271926-273503                                             28   2.5  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           28   2.5  
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    27   5.7  
01_06_1615 - 38652493-38652668,38652896-38653043,38653125-386533...    26   7.6  

>02_01_0039 - 271926-273503
          Length = 525

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 116 FRCTTGETLGSGADKGCCYQCPEYFAYQH 202
           FR      +    +KG C+ CPE F+  H
Sbjct: 263 FRRLLAAEMAERREKGLCFNCPEKFSKDH 291


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 101 FPTGIFRCTTGETLGSGADKGCCYQ---CPEYFAYQHMTFYDLHLYLRPCRKPSAKTG 265
           F T   RC   E + +  +  C Y    CP+  AY ++T ++      PC  P    G
Sbjct: 79  FGTPSVRCVAMERVVNSVEVACAYAEHGCPDKIAYANITEHEKTCPHAPCFCPEPGCG 136


>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 162 PLSAPLPRVSPVVHRNIPVGKLGRHSNRVMRSFEG 58
           PL +P P  SP  HR   + +L R S RV RS  G
Sbjct: 247 PLPSPSPSTSPRTHRAGSILRL-RLSTRVQRSSGG 280


>01_06_1615 -
           38652493-38652668,38652896-38653043,38653125-38653340,
           38653572-38653701,38653801-38653823,38654238-38654292,
           38654370-38654428,38654516-38654569
          Length = 286

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 168 QQPLSAPLPRVSPVVHRN 115
           Q P S PLPR+S  V RN
Sbjct: 119 QLPKSLPLPRISAAVERN 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,662,439
Number of Sequences: 37544
Number of extensions: 164981
Number of successful extensions: 369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)