Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f12
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   4.8  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   6.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.3  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   8.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.3  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 101 IGEHVKLYLNVYPDDA 148
           +G+HVKL+ NVY D A
Sbjct: 4   VGKHVKLFWNVYSDYA 19


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 489 SCSPATGRARGTVR*PPSCTRTG 421
           SC+P  G   G V  P SCT  G
Sbjct: 359 SCAPIQGHVAGIVDIPNSCTTIG 381


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 310 TSSRIPTVLSPSLSSKKP 363
           TSS +P V  PSL SK P
Sbjct: 382 TSSNVPPVNRPSLKSKSP 399


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 134 YPDDADQESELRRL*--HHQHI*SR-RERNTNQQHRSIPELHT 253
           Y  D+D++S+ RR    HH+    R RER+ N+QH S    H+
Sbjct: 159 YSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHS 201


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = +3

Query: 339 SITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVI 449
           +I ++ E++ ++V  +E   + KEV  H+Y ++ E++
Sbjct: 27  AIGMLSESLKEKVVTNEIAPALKEVKNHKYNFETEIL 63


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 357 ETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPD 470
           E   + + +H+N E DKE+ +     K E+     EP+
Sbjct: 186 ENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,069
Number of Sequences: 5004
Number of extensions: 48402
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)