Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f10
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0054 - 773395-774518,776957-777124,777455-778376                 32   0.42 
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251           28   5.2  
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118           28   6.9  
02_01_0039 - 271926-273503                                             28   6.9  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    27   9.1  
03_02_0198 + 6344952-6347483                                           27   9.1  

>10_01_0054 - 773395-774518,776957-777124,777455-778376
          Length = 737

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 342 CQECPSCACPSDFN-----PSTPSMYDCRKYGHCLPSNDLITRFECLPNFPTGIFRCTTG 506
           C++   CA P+ +       +TP  Y+CR +    PS D   + EC   FP    R   G
Sbjct: 306 CKDIDECAHPNKYPCHGVCRNTPGDYECRCHTGYQPSGDGPKKQECSSKFPFPA-RLAVG 364

Query: 507 ETLG 518
            TLG
Sbjct: 365 ITLG 368


>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
          Length = 347

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
 Frame = +3

Query: 366 CPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNF--PTGIFRCTTGETLGSGADKGC 539
           CP   N   P ++ C+  GH L S          P      G  RC   E +    +  C
Sbjct: 86  CPVCTNSMYPPIHQCQN-GHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPC 144

Query: 540 CY---QCPEYFAYQHMTFYDLHLYLRP 611
            Y    CPE F Y     ++     RP
Sbjct: 145 KYCSLGCPEIFPYYSKIKHEAQCMFRP 171


>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
          Length = 361

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
 Frame = +3

Query: 366 CPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNF--PTGIFRCTTGETLGSGADKGC 539
           CP   N   P ++ C+  GH L S          P      G  RC   E +    +  C
Sbjct: 100 CPVCTNSMFPPIHQCQN-GHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPC 158

Query: 540 CY---QCPEYFAYQHMTFYDLHLYLRP 611
            Y    CPE F Y     ++     RP
Sbjct: 159 KYCSLGCPEIFPYYSKIKHEAQCSFRP 185


>02_01_0039 - 271926-273503
          Length = 525

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 489 FRCTTGETLGSGADKGCCYQCPEYFAYQH 575
           FR      +    +KG C+ CPE F+  H
Sbjct: 263 FRRLLAAEMAERREKGLCFNCPEKFSKDH 291


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 310 DQRVLKLTRKRVKNVLLAPALVISTHQLQACTIVGNM 420
           D+  +KLT K+  N LL  A V+   QL+   +VG +
Sbjct: 456 DEVNIKLTEKKKANSLLHAAKVLDEFQLELIHVVGGI 492


>03_02_0198 + 6344952-6347483
          Length = 843

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +3

Query: 354 PSCACPSDFNPSTPSMYDCRK-YGHCLPSNDLITR---FECLPNFPTGIFRCTTGETLGS 521
           P C CP+ F P +   +      G C+  + L      F  LP +   +   +     G+
Sbjct: 321 PECRCPAGFEPRSSEEWRLENAAGGCVRRHPLECHGDGFLALP-YTVRLPNGSVEAPAGA 379

Query: 522 GADKGCCYQC 551
           G DK C + C
Sbjct: 380 GNDKACAHTC 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,061
Number of Sequences: 37544
Number of extensions: 281261
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)