Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f09
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608...    29   4.8  
09_02_0414 - 8825575-8826654,8826737-8827144                           28   8.4  

>04_03_0459 +
           16159015-16159771,16160251-16160365,16160478-16160844,
           16160930-16161244,16161324-16161644,16161730-16161882
          Length = 675

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 203 QLLMWSVPSIAVLLGIFWFKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANRG 370
           Q ++ S+P+ ++L G F  KK  E  K     R  ++  +++  E+L  Q +A RG
Sbjct: 41  QAILPSMPNNSILFGTFMQKKLEELRKKAMKHRALVQGTQQQRFEIL-CQDKAGRG 95


>09_02_0414 - 8825575-8826654,8826737-8827144
          Length = 495

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 251 FWFKKKREYAKSDPGGRER-LKSLKEELAEVLNAQAEAN 364
           +W K   EY  + PG R R +K LK     ++N  A  N
Sbjct: 149 YWDKVAAEYNSATPGARRREVKHLKNRWQRMINKVAHFN 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,913
Number of Sequences: 37544
Number of extensions: 302753
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)