Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f08
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    59   5e-10
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    49   6e-07
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    31   0.12 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.87 
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    28   1.1  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    28   1.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   4.6  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.1  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.1  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
 Frame = +3

Query: 246 AARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDD---NNFVLWESRAIACYLAD 416
           A + + +  +   VN  K EQ     L LNP   VPTL D   N++ +WES AI  YLAD
Sbjct: 21  ALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLAD 80

Query: 417 KYGKDDQ-WYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIK--QSLKDDL 587
           KY  + +   P+D  +   V Q L+F ++   +      +  ++  E  I      ++++
Sbjct: 81  KYDTERKISLPRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYRNEI 140

Query: 588 NSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAV 704
              L  L   L+   ++ A+  TIAD S + S ++ L +
Sbjct: 141 KRVLGVLEDILKDRDYLVANRFTIADLS-FISWNNFLEI 178


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
 Frame = +3

Query: 186 MSSLKLYHFPVSGPSRG-ALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLD 362
           M+   LY     GP+    +LA + + +  +    +  K EQ  +  L LNP   VPTL 
Sbjct: 1   MAHFTLYSH-AGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLV 59

Query: 363 D---NNFVLWESRAIACYLADKYGKDDQ-WYPKDLQKRAVVNQRLYFDSASLYVKIRAIC 530
           D   N++ +WES AI  YLADKY  D +     D  +   + Q L+F ++   V      
Sbjct: 60  DHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLIQYLFFQASGQGVIWGQAG 119

Query: 531 FPILFLGETEIK--QSLKDDLNSTLSFLNQFLEKTKWVAADHPTIADTS 671
           +   F  E  +      ++++   L  L   L+   ++ A+  TIAD S
Sbjct: 120 WFNFFHHEPVVSAVTRYRNEIKRVLGVLEDILKDRDYLVANKYTIADLS 168


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 225 PSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWE 386
           PS+  L    A+    Q+E  +  K  QL+ SFL  N    +   DDNN VL E
Sbjct: 248 PSKDLLQKLLALEKDGQVEKSDCSKNTQLKPSFLPKNTDDLLNGTDDNNIVLRE 301


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 574 KLCLISVSPRNNIGKQIALILTYKDALSKYNLWF 473
           K CL+S S RNN+ K++ L++T   A+   ++ F
Sbjct: 418 KECLLSKSYRNNVRKEVILLMTEYFAIFSNSIAF 451


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/102 (23%), Positives = 46/102 (45%)
 Frame = +3

Query: 201 LYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVL 380
           L+H   S  +R  +     + +P +I++ +     +   ++ KL+P    P + D+    
Sbjct: 4   LHHLKNSRSTR-IVWMLEELKVPYEIKVYDRVDG-RAPPAYTKLSPLGKSPIVVDDGVTY 61

Query: 381 WESRAIACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASL 506
            ES AI  +L  KYG   +   +D+ +       ++F  ASL
Sbjct: 62  IESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEASL 103


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 56  FVFDSNIIGKVVVIKFELIDLSYPFVN 136
           FV ++++  K  ++K E  D S+PF N
Sbjct: 295 FVGEADVANKTTLVKLEKYDASHPFAN 321


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +3

Query: 261 GIPIQIEIVN-LFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYLADKYGKDDQ 437
           G P+  +I++  +K  ++ E + K   Q C+    D  ++LW       ++AD Y     
Sbjct: 78  GEPVIPKIIHQTWKTTEVPEGW-KGAQQSCIDLHPDYEYILWTDEMSRNFIADNYPWFLP 136

Query: 438 W---YPKDLQKRAVVNQRLYFDSASLYVKIRAIC 530
           +   YP ++Q+  V+   + +     Y+ +   C
Sbjct: 137 YFDAYPFNVQRADVIRYFVLYHYGGNYIDLDDGC 170


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 483 LYFDSASLYVKIRAICFPILFLGETEIKQSLK-DDLNSTLSFLNQFL---EKTKWVAAD 647
           L+FD    +  I  I   ++   E   ++SL  D+  S + +LNQFL   +K +++A D
Sbjct: 323 LHFDRLFGHYGIPCIVLNLVKSSEKVKRESLLLDEFESAIQYLNQFLKDSQKIQYIAWD 381


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 579 DDLNSTLSFLNQFLEK-TKWVAADHPTIADTSI 674
           +DLN  +  L+  +E  TK V+ +HP  + TSI
Sbjct: 806 EDLNFAMQQLDASIETFTKLVSVEHPPYSPTSI 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,211
Number of Sequences: 5004
Number of extensions: 55251
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)