Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f07
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   2.0  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    27   2.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   4.6  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.0  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 478 VFGPVVMRMFHFLDAPKEALQC 543
           +FG +  R  HFLD+P+ A QC
Sbjct: 107 IFGDLSSRGVHFLDSPELANQC 128


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 652 QRPCTSHQTFHDNTVNQVI 596
           QRP TS +TFH  +V Q I
Sbjct: 50  QRPATSCRTFHSKSVEQTI 68


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = +1

Query: 277 NVKEQFV---NFSEKFKTK---MNDFVSDSKNMIFTEDL-KNMVHLAEPSDLQLVLNMIK 435
           NV+E+++   ++ +KF T      D  S+++   F  ++ K  +HL++ + L L   +++
Sbjct: 406 NVEEKYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPKEFLHLSDSTYLDLEKQVLR 465

Query: 436 KFNTQSTE 459
            FN Q  E
Sbjct: 466 IFNVQIEE 473


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 643 CTSHQTFHDNTVNQ 602
           C SH++FH+ TV+Q
Sbjct: 18  CVSHRSFHNTTVSQ 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,588
Number of Sequences: 5004
Number of extensions: 64082
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)