Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f06
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...   112   4e-26
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.6  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   4.6  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   6.0  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   6.0  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   8.0  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score =  112 bits (270), Expect = 4e-26
 Identities = 57/107 (53%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = +1

Query: 385 YNPWPSYTFTGKLRP-FPAGPKRTVPPHIGRPDYADHPTGFPASEYAAKGSAQIKILDDE 561
           YNP+P + F G L+P +P  P R VPPHI RPDYA   TG   SE     S ++K L  +
Sbjct: 66  YNPFPKFHFAGSLKPVYPLSPIRKVPPHIKRPDYAK--TGVSRSEQIEGRSFKLKRLTPK 123

Query: 562 EIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIERGMLP 702
           E EGMR  CRLGREVLD AA     G +TDE+D +VH ACIER   P
Sbjct: 124 EQEGMRKVCRLGREVLDAAAAAVRPGTTTDELDSIVHNACIERDCFP 170


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 334 SNDDDREGDNTDAANVEYNPWPSYTFTGKL 423
           S D+D +  +   +NVEY P+ S TF  +L
Sbjct: 198 SEDEDLQLPSNSNSNVEYGPFDSTTFDRQL 227


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +1

Query: 523 AKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEAC 681
           AK S  I+IL   E + +R    LG+E  D       V  S      ++H  C
Sbjct: 57  AKKSDAIEILPISEFDPVRSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTC 109


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 340 DDDREGDNTDAANVEYN 390
           +DD E +++DA+N EYN
Sbjct: 347 EDDEEDESSDASNNEYN 363


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 390 PMAVVYLYGKAETVPGRAKTH 452
           P A ++LYGKAE+  GR   H
Sbjct: 338 PGATLHLYGKAESRKGRKMGH 358


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 680 QASWTTRSISSVLTPTSHTLAASSRTSLPR 591
           + S T++S S   T T+HT  +S    LPR
Sbjct: 161 EKSTTSKSKSHTTTATTHTSRSSKSKGLPR 190


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 442 ALPGTVSAFP*RYTTAMGYIPRLQHRYCH 356
           ++P T+   P  Y+ ++   P L H Y H
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSYVH 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,261
Number of Sequences: 5004
Number of extensions: 57687
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)