Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f05
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   1.6  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.9  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   5.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.6  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 523 SEYSMCSPLDSGKMPPWILLHSL 455
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 89   GRLGGHSLWLQH 54
            GRLGGH +W+ H
Sbjct: 1268 GRLGGHDIWISH 1279


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 274 NQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQ 405
           + V G+D L  D++  +      D  +LFTK +  + ++  DIQ
Sbjct: 212 DSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQ 255


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 603 FIRDEGIGKSGFLFWLNFSVIRQRGEVLNIVCVVHWIA 490
           F+ D  +G  GFL    F    Q+G V N    + ++A
Sbjct: 134 FLGDFTVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLA 171


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 274 NQVVGDDALVDDDESVVKSSQDIDTTILF 360
           N +V DDA  DD+  +  SS  ++T  LF
Sbjct: 44  NSLVVDDATNDDNSVITLSSNTMETLQLF 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,092
Number of Sequences: 5004
Number of extensions: 44850
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)