Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16f05
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565... 42 3e-04
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 30 1.3
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 30 1.7
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 29 3.9
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 29 3.9
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 5.2
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 27 9.0
01_06_0467 - 29579159-29579662 27 9.0
>06_03_1396 +
29855256-29855328,29856019-29856180,29856466-29856516,
29857189-29857277,29857632-29857709,29857811-29858014,
29858101-29858172,29858262-29858306
Length = 257
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +1
Query: 280 VVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 459
+V DD V D + + ++T +F K + + AG E VG N+G
Sbjct: 47 IVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGLQNEGEST 99
Query: 460 YVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEATFAYSF 591
V ++ ++ P D+ Y QN T +N V +ATF Y+F
Sbjct: 100 LNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTF 144
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 476 WRHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 613
WR + + T H + R PR + S KP +P P+ + PLL
Sbjct: 174 WRKGNPVS-TVHKVVRDHPRSESRNQSSSTAKPSMPAPTKPVPPLL 218
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 277 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 408
Q+VGDD LV + V K+ Q+ L K V +G +T I+A
Sbjct: 326 QIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 479 RHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 613
R +SA+ T T +P + ++L+ + LP+P L+ PLL
Sbjct: 35 RDVSAVARTVATEILAAPSSAVCKRLALDLLRALPLPPDLLDPLL 79
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 479 RHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 613
R +SA+ T T ++P + ++L+ + LP+P L+ PLL
Sbjct: 35 RDVSALARTVATEILSAPSSAVCKRLALDLLRALPLPPDLLDPLL 79
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 277 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 447
+V+G + L+D + K +D+D TI + P D I++ Y EFF+GF+ +
Sbjct: 81 EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 277 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 408
Q+VGDD LV + V K+ + L K V +G +T I+A
Sbjct: 354 QIVGDDLLVTNPTRVAKAISEKTCNALLLK-VNQIGSVTESIEA 396
>01_06_0467 - 29579159-29579662
Length = 167
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 325 KSSQDIDTTILFTKPVPSLGDL 390
K+SQ IDT ++F KP+ S +L
Sbjct: 25 KASQAIDTAVIFNKPISSSVEL 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,151
Number of Sequences: 37544
Number of extensions: 288845
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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