Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f05
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    93   1e-19
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    33   0.22 
Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/104 (41%), Positives = 63/104 (60%)
 Frame = +1

Query: 304 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 483
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 484 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAG 615
           SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAG
Sbjct: 95  SFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAG 138


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 482 HLSAIQWTTH-TIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPL 610
           HL+ I  TTH TIF  SPR +   K SQ   P  P  +S M+P+
Sbjct: 7   HLTGITGTTHFTIFGASPRSMSLVKNSQETPP-FPGMNSTMRPV 49


>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 49  VLCWSQSECPPSRPWQPHDF*SLYFI*NKCYFKMKLIYFTF 171
           +L + QS C  S P +  D  SLY + NK Y   + +  TF
Sbjct: 294 LLQYCQSTCQKSAPSRLTDLLSLYNVTNKAYDGFQYLCMTF 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,551
Number of Sequences: 27780
Number of extensions: 251388
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)