Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16f02
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 32 0.44
08_02_0275 - 15208561-15209142 31 0.77
05_01_0475 - 3818121-3820565 30 1.8
02_05_0142 - 26227792-26228346,26228486-26228608,26229824-262300... 30 1.8
02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823... 30 1.8
06_03_0385 - 20234160-20234798,20234888-20235238 29 2.3
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 29 4.1
01_05_0519 - 22897277-22897986,22898126-22898225 29 4.1
10_08_0461 - 18113348-18113389,18113683-18114231 28 5.4
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 5.4
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 28 5.4
01_06_0695 - 31292622-31293317 28 5.4
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047 28 7.1
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 7.1
01_06_1311 - 36181961-36182519,36182547-36182605 27 9.4
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -2
Query: 221 PPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSR 111
PPSAG C ST+ ++A D PP SAAASS+
Sbjct: 485 PPSAGACCSTTQASASAKD--GGNMYSPPCSAAASSQ 519
>08_02_0275 - 15208561-15209142
Length = 193
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 215 SAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRA 90
+ GL ++ +TST+ + D G G + AA++RC +CRA
Sbjct: 80 AVGLLTANATSTSVKIDALLRGGGGGGKVDAATARCLRSCRA 121
>05_01_0475 - 3818121-3820565
Length = 814
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 203 CSSTSTSTAPRHDVARSGRGPPPR---SAAASSRCRWTCRADASCRSHS 66
CS+T++ST H +AR P+ +A S+C C + SC ++S
Sbjct: 358 CSNTTSSTDVFHTIARVRLPYNPQIVDNATTQSKCAQACLSYCSCNAYS 406
>02_05_0142 -
26227792-26228346,26228486-26228608,26229824-26230084,
26230658-26231116
Length = 465
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/57 (40%), Positives = 26/57 (45%)
Frame = -2
Query: 221 PPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHSRIPWL 51
PPSA SS STST VA S +AAA W+ R+ S S IP L
Sbjct: 32 PPSALAGSSHSTSTVSSSAVATSQSTEDSSAAAARPAAGWS-RSSGSVSSARSIPEL 87
>02_02_0558 +
11477433-11477525,11477632-11477973,11481854-11482381,
11482459-11482956
Length = 486
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 85 ASALQVHLQRDDAAALRGGGPRP-DRATSCRGAVLVLVLEHKPALGGQRPASAQLVQQHG 261
A+ +V DAA +GGG + + A VL+LEH PA GG P++ G
Sbjct: 16 AAVRKVFRPSKDAADKKGGGGGDREEEAAAEAAPEVLLLEHFPA-GGTSPSAEGTGNDQG 74
Query: 262 G 264
G
Sbjct: 75 G 75
>06_03_0385 - 20234160-20234798,20234888-20235238
Length = 329
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 224 CPPSAGLCSSTSTSTAPRHDV-ARSGRGPPPRSAAASSRCRWTCRADAS 81
CP +C++ S D+ +R PPPR +S + +CRA AS
Sbjct: 282 CPNK--ICTANGNSKVTIKDITSRISPAPPPRPRPLASSAQTSCRAPAS 328
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +1
Query: 85 ASALQVHLQRDDAAALRGGGPRPDRATSCRGAVLVLVLEHKPALGGQRPASAQLVQQHGG 264
A+A + R A ALR GG R A RGA V+ +PA PA + +G
Sbjct: 11 AAAASISASRVGAGALRAGGLRV--AAGRRGAGAVVAAAMRPAKAVASPAKEAAGEVNGA 68
Query: 265 A 267
A
Sbjct: 69 A 69
>01_05_0519 - 22897277-22897986,22898126-22898225
Length = 269
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -2
Query: 233 AGRCPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCR 105
A PP A T A HDVA PPP++ + S R
Sbjct: 99 AAALPPKANQEEEKETKKADEHDVAGKPPPPPPKTDSDQSERR 141
>10_08_0461 - 18113348-18113389,18113683-18114231
Length = 196
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 212 AGLCSSTSTSTAPRHDVARSG-RGPPPRSAAASSRCRWTCRA 90
A + ++TSTSTA R V R P SA S R CR+
Sbjct: 9 AAMPAATSTSTATRRGVPRGAMTAASPASATRGSGARRRCRS 50
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 221 PPSAGLCSSTSTSTAPRHDVARSGRGPP-PRSAAASSRCR-WTCRADASCRSHSRIPWLM 48
PP+ CSS S P + R P + A + C+ W C A A+ S PWLM
Sbjct: 19 PPATDPCSSGHWSDLPVDLLHRILHSLELPEALAVADVCKSWCCAAIAAGVPRSCTPWLM 78
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 218 PSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAAS 117
P+ +S+S++ RSGRG PP SA AS
Sbjct: 424 PARESSDESSSSSSSSFSGIRSGRGSPPSSAPAS 457
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 218 PSAGLCSSTSTSTAPRHDVARSGRGPPPR 132
PS+ SS+S+ST+P H R+ P PR
Sbjct: 19 PSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
Length = 162
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 124 AALRGGGPRPDRATSCRGAVLVLVLEHKPALGGQRPASAQLVQQHGGA 267
A + G + ATSC G V V V E + +LGG + A+ V GGA
Sbjct: 8 AGVSGLAAAHELATSCAGGVDVTVYEKEDSLGG---SFARTVGVDGGA 52
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 224 CPPSAGLCSSTSTST-APRHDVARSGRGPPPR 132
CPP +S STS+ P D A S PPPR
Sbjct: 462 CPPEPTSSTSGSTSSWVPPRDNASSWAPPPPR 493
>01_06_1311 - 36181961-36182519,36182547-36182605
Length = 205
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 161 ARSGRGPPPRSAAASSRCR 105
A SG GPPP S AA++R R
Sbjct: 80 AASGAGPPPSSPAAAARKR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,720
Number of Sequences: 37544
Number of extensions: 250016
Number of successful extensions: 1224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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