Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16f02
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.1  
U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 121 AAALRGGGPRPDRATSCRGAVLVLV 195
           +  L GGG RP++  +CRG V +++
Sbjct: 193 SVCLYGGGSRPEQVEACRGGVEIVI 217


>U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical
           protein C46H11.7 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 227 RCPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAAS 117
           +CP + G C+ST+TS+    D+     G    +A AS
Sbjct: 121 QCPRTCGRCNSTTTSSTSCADLVNPSTGVSDCTARAS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,572,323
Number of Sequences: 27780
Number of extensions: 158810
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)