Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e23
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...   149   3e-37
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    30   0.26 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   3.1  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    26   4.2  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score =  149 bits (361), Expect = 3e-37
 Identities = 63/130 (48%), Positives = 85/130 (65%)
 Frame = +1

Query: 268 LCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALES 447
           LCC+C VP   N + MC+ C++   DIT GIP+++T+  CR CERY+QPP+ W++  LES
Sbjct: 23  LCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMIAPLES 82

Query: 448 REXXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFTI 627
           RE            ++V+L+DA F WTEPHS+RIKVKLTVQ E     +LQQ+F VEF +
Sbjct: 83  RELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQVEFYV 142

Query: 628 QHQMCDACHR 657
            +  C  C R
Sbjct: 143 NNTQCPDCAR 152


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -2

Query: 264 EVAFYMVGPIEEVVAKAETLAK 199
           E AFYMVG I++ V KAE +A+
Sbjct: 500 ESAFYMVGSIDDAVKKAEKIAQ 521


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 627 NCKFNYKCLLEHCSSD 580
           NCKF  KC LEH   D
Sbjct: 77  NCKFGSKCALEHVLPD 92


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 306 LKYVCSLFKGSCRHHRWNTQ 365
           LK+ C++F+G+ R H + T+
Sbjct: 220 LKHACTMFRGTHRFHSYTTE 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,245
Number of Sequences: 5004
Number of extensions: 48338
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)