Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e23
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1016 - 22262760-22264331 128 3e-30
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 109 1e-24
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 29 3.3
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 4.3
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 29 4.3
01_05_0250 - 19907517-19908429,19910000-19910268 28 5.7
01_05_0194 - 19107143-19108055,19110864-19111132 28 5.7
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 27 9.9
>10_08_1016 - 22262760-22264331
Length = 523
Score = 128 bits (310), Expect = 3e-30
Identities = 59/133 (44%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Frame = +1
Query: 268 LCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALES 447
LCC C V ++ NP+NMC C+RA VDIT+G+P+ A + +C C YLQPP W+ ES
Sbjct: 25 LCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPES 84
Query: 448 RE---XXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVE 618
E RV L A F ++EPHSKR+++KL ++ EV VL+QT VE
Sbjct: 85 PELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVE 144
Query: 619 FTIQHQMCDACHR 657
FT+ ++CDAC R
Sbjct: 145 FTVHDRLCDACAR 157
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 109 bits (263), Expect = 1e-24
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Frame = +1
Query: 268 LCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALES 447
+CC C VP+ N +N C C+R+ VDI G+P+ A + C C YL PP W+ A ES
Sbjct: 438 ICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPSCSSYLHPPRLWLRAAPES 497
Query: 448 REXXXXXXXXXXXXSR---VKLIDAGFAWTEPHSKRIKVKLTVQGEVI----GGAVLQQT 606
E V L A F +TEPHS+R+ ++L ++GEV+ GG L+Q
Sbjct: 498 PELMSLLLRRVDRHIARLGVALAAAEFVFTEPHSRRLMLRLRLRGEVLHGSGGGVTLEQG 557
Query: 607 FIVEFTIQHQMCDAC 651
+VEF + ++CDAC
Sbjct: 558 HVVEFAVHDRLCDAC 572
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Frame = +1
Query: 187 CLCIFGKCFCFSYNFFNGS---------NHVKCNFRLCCQCAVPIEANPSNMCVACLRAH 339
C GK FC NFF+ + + C + +C + A+ C C R+
Sbjct: 77 CGACMGKYFCEKCNFFDDDYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACPVCSRSA 136
Query: 340 VDITDGIPKQATLFFCRGCERYLQPPSEWVVC 435
D++D K + Q W++C
Sbjct: 137 CDMSDAWKKLDEEVAATPMPEFYQKKMIWILC 168
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 488 NPFNLLRQRAKSSRDSNAHTTHSEGGCKYLSQPLQKNNVAC 366
+P + Q SS S+ H S G KY+ Q+ VAC
Sbjct: 146 HPVFPVTQGVSSSNSSSQHVVSSSGEAKYIGNSGQEMQVAC 186
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 250 VKCNFRLCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWV 429
++ +FR P+ + V R D DG+ ++A+L R ++PP W+
Sbjct: 47 IRASFRPTVAATPPVPELDLLLIVTVTRPDDDDDDGMSQEASLTRLGHTLRLVEPPLLWI 106
Query: 430 VCALES 447
V E+
Sbjct: 107 VVGAEN 112
>01_05_0250 - 19907517-19908429,19910000-19910268
Length = 393
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 355 GIPKQATLFFCRGCERYLQP 414
GIP A+ F C+ CE LQP
Sbjct: 78 GIPLAASTFLCQRCETVLQP 97
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 355 GIPKQATLFFCRGCERYLQP 414
GIP A+ F C+ CE LQP
Sbjct: 78 GIPLAASTFLCQRCETVLQP 97
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 184 SCLCIFGKCFCFSYNFFNGSNHVKCNFRLCCQCAVPIEANPSNMCVA 324
+C G+ FC + FF+ + V+C L C C + + N S +A
Sbjct: 64 NCGVCMGEYFCSACKFFD--DDVRCRCCLLCFCWIWLTGNTSTAKIA 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,399
Number of Sequences: 37544
Number of extensions: 284030
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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