Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e23
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 152 2e-37
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 32 0.41
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 5.1
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 5.1
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 5.1
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 5.1
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 28 6.7
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 28 6.7
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 28 6.7
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 152 bits (369), Expect = 2e-37
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +1
Query: 271 CCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPSEWVVCALESR 450
CC+C V IE NP+NMC CLR+ VDIT+GI +Q T++ C+ C+RY PPS W+ LES+
Sbjct: 15 CCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSAWMRAELESK 74
Query: 451 E-XXXXXXXXXXXXSRVKLIDAGFAWTEPHSKRIKVKLTVQGEVIGGAVLQQTFIVEFTI 627
E ++V+L DA F WTE HSKRIKVK+T+Q EV +LQQ +VEFT+
Sbjct: 75 ELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTV 134
Query: 628 QHQMCDACHR 657
Q+CD C R
Sbjct: 135 HSQLCDDCRR 144
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2
Query: 264 EVAFYMVGPIEEVVAKAETLAK 199
EVAFYM G I++V KAE LAK
Sbjct: 513 EVAFYMQGGIDDVFKKAEELAK 534
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 268 LCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 414
+C + + + +P N C CL+ I + A+ +C+ CE + +P
Sbjct: 44 VCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 268 LCCQCAVPIEANPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQP 414
+C + + + +P N C CL+ I + A+ +C+ CE + +P
Sbjct: 44 VCVETGITVNVDPQN-CYRCLK--------ITENASFAYCKNCEEFYEP 83
>U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical
protein F59A3.7 protein.
Length = 260
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 126 SLVIIIINTNYTSASENIYINKCVKIKVVFLFVIDFITFCFI 1
++++I I N AS + + C++ + LF + F++ CFI
Sbjct: 28 NILLIYILWNMILASLFLVLKLCIESSISILFSLPFVSTCFI 69
>Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical
protein T08G5.2 protein.
Length = 728
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 211 FCFSYNFFNGSNHVKCNFRLCCQCAVPIEANPSNMCV 321
FC SY FF G+ H +CAV I+ N + CV
Sbjct: 46 FCDSYRFFTGNFH---------ECAVKIDRNQKDPCV 73
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 GSNHVKCNFRLCCQC--AVPIEANPSNMCVACLRAHVDITDGIPK 366
GS VKC+ RLC +C E+ +C C + ++D+ DGIP+
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTK-NMDL-DGIPR 698
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 GSNHVKCNFRLCCQC--AVPIEANPSNMCVACLRAHVDITDGIPK 366
GS VKC+ RLC +C E+ +C C + ++D+ DGIP+
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTK-NMDL-DGIPR 698
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 GSNHVKCNFRLCCQC--AVPIEANPSNMCVACLRAHVDITDGIPK 366
GS VKC+ RLC +C E+ +C C + ++D+ DGIP+
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTK-NMDL-DGIPR 698
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 GSNHVKCNFRLCCQC--AVPIEANPSNMCVACLRAHVDITDGIPK 366
GS VKC+ RLC +C E+ +C C + ++D+ DGIP+
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTK-NMDL-DGIPR 698
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 238 GSNHVKCNFRLCCQC--AVPIEANPSNMCVACLRAHVDITDGIPK 366
GS VKC+ RLC +C E+ +C C + ++D+ DGIP+
Sbjct: 656 GSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTK-NMDL-DGIPR 698
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -1
Query: 379 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTI 266
+ ++ W F C H+ PL L +GL+ VQHTD +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQV 277
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -1
Query: 379 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTI 266
+ ++ W F C H+ PL L +GL+ VQHTD +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQV 277
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -1
Query: 379 IMSLVWVFHL*CLHE----PLNKLHTYLRGLLL*VQHTDSTI 266
+ ++ W F C H+ PL L +GL+ VQHTD +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQV 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,792
Number of Sequences: 27780
Number of extensions: 290547
Number of successful extensions: 647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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