Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e22
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 242 3e-65
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 192 3e-50
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 157 2e-39
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 57 2e-09
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 44 2e-05
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 38 3e-05
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 41 1e-04
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 36 0.004
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 36 0.007
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 34 0.020
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 33 0.026
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 33 0.026
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 32 0.061
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 32 0.061
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.081
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 31 0.11
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.14
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 31 0.19
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.19
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 30 0.25
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 30 0.33
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 30 0.33
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 30 0.33
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 29 0.43
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.43
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 29 0.57
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.57
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 0.75
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.75
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.00
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.3
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos... 27 1.7
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 1.7
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 1.7
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 2.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.3
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 27 2.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 3.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 3.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.3
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 5.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 5.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.3
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.3
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 25 9.3
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 9.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 9.3
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 25 9.3
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 242 bits (592), Expect = 3e-65
Identities = 112/163 (68%), Positives = 135/163 (82%)
Frame = +2
Query: 146 LPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYT 325
LPWVEKYRP L+D+VSH DII T+ +F+ N++PH+LFYGPPGTGKTSTILACA+++Y
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 326 PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALR 505
P + + ++ELNASDDRGI VR QI +FASTR IF + K+IILDEADAMT AQNALR
Sbjct: 83 PN-YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALR 141
Query: 506 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 634
R+IEKYT+NVRFCIICNY+ KI PA+QSRCTRFRF PL +I
Sbjct: 142 RVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEI 184
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 192 bits (469), Expect = 3e-50
Identities = 91/182 (50%), Positives = 123/182 (67%), Gaps = 6/182 (3%)
Frame = +2
Query: 110 KNNMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKT 289
+N T E +++PWVE YRPK LD + S + ++ + + + N LPH+LFYG PGTGKT
Sbjct: 7 RNKKTEQEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKT 66
Query: 290 STILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------KL 451
STILA +++++ PQ S VLELNASD+RGI I+R ++ SFA T K K+
Sbjct: 67 STILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKI 126
Query: 452 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 631
IILDEAD+MT DAQ ALRR +E Y RFC+ICNY+ +II L SRC+++RF PL +
Sbjct: 127 IILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNEN 186
Query: 632 IV 637
+V
Sbjct: 187 MV 188
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 157 bits (380), Expect = 2e-39
Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +2
Query: 110 KNNMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKT 289
KNN E LPWVEKYRP LDD+V +++ I + KE +PHL+ G PG GKT
Sbjct: 13 KNNSVAYE----LPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKT 68
Query: 290 STILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDE 466
++IL A + P + VLELNASD+RGI +VR +I +FA + I G K+IILDE
Sbjct: 69 TSILCLAHALLGPA-YKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDE 127
Query: 467 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 637
AD+MT AQ ALRR +E Y+ RF + CN KII +QSRC R++ L Q++
Sbjct: 128 ADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVL 184
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 57.2 bits (132), Expect = 2e-09
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +2
Query: 152 WVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 328
W+++YRPK L L H + + + N+ PHLL YGP G GK + ++A +++Y P
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/64 (40%), Positives = 41/64 (64%)
Frame = +2
Query: 446 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 625
K+++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR R A
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTP 188
Query: 626 DQIV 637
++I+
Sbjct: 189 EEII 192
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 152 WVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH--LLFYGPPGTGKTSTILACAKQM 319
W EKY P++ DL H I I Q+M + L LL GP G GK++ + AK++
Sbjct: 72 WFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 37.5 bits (83), Expect(2) = 3e-05
Identities = 27/88 (30%), Positives = 39/88 (44%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 433
++ G G GKT+ A Q VLE+NASDDR V ++ S S +
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQA------GYKVLEINASDDRTAHTVHEKVSSAISNHSAL 472
Query: 434 KAGPKLIILDEADAMTNDAQNALRRIIE 517
+ P +I+DE D AL ++E
Sbjct: 473 SSQPTCVIVDEIDGGDPAFVRALLSLLE 500
Score = 25.0 bits (52), Expect(2) = 3e-05
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 116 NMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMK 235
N T Q L WV+ YRP+ DL+ + + + ++K
Sbjct: 342 NCTTKPQSQKL-WVDTYRPQLFRDLLGDERVHRAAMHWIK 380
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 41.1 bits (92), Expect = 1e-04
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 4/166 (2%)
Frame = +2
Query: 149 PWVEKYRPKRLDDLVSHDDII---KTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQM 319
P E+ RPK LD+ V ++++ I +++++ ++ +G GTGKT+ LA +
Sbjct: 85 PLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT--LARLIAV 142
Query: 320 YTPQQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 496
T +F + +D R I L+ +TI I LDE Q+
Sbjct: 143 TTKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTI-------IFLDEVHRFNRAQQD 195
Query: 497 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 634
++EK + N ++ AL SRC F L +D +
Sbjct: 196 IFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNV 241
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 36.3 bits (80), Expect = 0.004
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 242 QLPH-LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILS-FA 415
+LP +L GPPGTGKT A A + P F S + D+ +G+ ++ FA
Sbjct: 298 KLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSG----SQFDEMYVGVGAKRVRELFA 353
Query: 416 STRTIFKAGPKLIILDEADAM 478
+ R K P +I +DE DA+
Sbjct: 354 AAR---KQAPSIIFIDELDAI 371
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD--DRGIGIVRGQI-LSFASTR 424
+LF+GPPGTGKT A T Q S L SD + +G Q+ L F R
Sbjct: 409 VLFHGPPGTGKTLMARVLAANCSTKNQKISFFLR-KGSDCLSKWVGEAERQLRLLFEEAR 467
Query: 425 TIFKAGPKLIILDEADAM 478
+ P +I DE D +
Sbjct: 468 ---RVQPSIIFFDEIDGL 482
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 33.9 bits (74), Expect = 0.020
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Frame = +2
Query: 152 WVEKYRPKRLDDLVSHDDIIKTINQFMKE---NQLPH--------------LLFYGPPGT 280
W KY P L D+ + +++ + +++++ N+ + +L GPPG
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 281 GKTSTILACAK-QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTI-----FKAG 442
GKT+ AK + Y VLELNASD R ++ Q+ ++++ KA
Sbjct: 421 GKTTAAHLVAKLEGYD-------VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKAN 473
Query: 443 P-------KLIILDEADAMTNDAQNA---LRRIIEKYTENVRFCIICN 556
P ++I+DE D M++ + L II+K + ICN
Sbjct: 474 PVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKK--SMIPIICICN 519
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 33.5 bits (73), Expect = 0.026
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 433
LL YGPPG GKT A AKQ Q + + + + D+ G L A
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ----SQATFINVSVGLLTDKWFG--ESNKLVDALFTLAR 181
Query: 434 KAGPKLIILDEADAMTNDAQ 493
K P +I +DE D Q
Sbjct: 182 KLEPTIIFIDEIDTFLRQRQ 201
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 33.5 bits (73), Expect = 0.026
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRTI 430
L +GPPGTGKT ACA Q + + ++++ D G +VR +FA +
Sbjct: 223 LMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGD--GAKLVRD---AFALAK-- 275
Query: 431 FKAGPKLIILDEADAM 478
+ P +I +DE DA+
Sbjct: 276 -EKSPAIIFIDELDAI 290
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 32.3 bits (70), Expect = 0.061
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 433
+L YGPPGTGKT + A A T F +V S+ + G + R
Sbjct: 171 VLLYGPPGTGKTMLVKAVANS--TAANFIRVV----GSEFVQKYLGEGPRMVRDVFRMAR 224
Query: 434 KAGPKLIILDEADAMTN---DAQNALRRIIEK 520
+ P +I +DE DA+ DAQ R +++
Sbjct: 225 ENAPAIIFIDEIDAIATKRFDAQTGADREVQR 256
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 32.3 bits (70), Expect = 0.061
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +2
Query: 227 FMKENQLPH--LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD-DRGIGIVRG 397
F + N P +LF+GPPGTGKT A A + + S + A + +G
Sbjct: 292 FQRFNMQPPRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAER 351
Query: 398 QI-LSFASTRTIFKAGPKLIILDEADAM 478
Q+ L F ++ P +I DE D +
Sbjct: 352 QLRLLFEEAKS---TQPSIIFFDEIDGL 376
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.9 bits (69), Expect = 0.081
Identities = 26/98 (26%), Positives = 45/98 (45%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 433
+L +GPPG GKT A A ++ P F S+ S G + + + F +++
Sbjct: 211 VLLHGPPGCGKTMLANALANELGVP--FISISAPSIVSGMSGESEKKVREV-FEEAKSL- 266
Query: 434 KAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCI 547
P L+ +DE DA+T ++A R + + C+
Sbjct: 267 --APCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCM 302
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 433
+L +GPPGTGKT A A + S+ ++AS + + L A
Sbjct: 495 MLLFGPPGTGKTMLARAVATES------RSVFFSISASSLTSKFLGESEKLVRALFTLAK 548
Query: 434 KAGPKLIILDEADAM 478
K P +I +DE D++
Sbjct: 549 KLSPSIIFVDEIDSL 563
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.14
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 266 GPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKA 439
GPPGTGKT A A + P S LE+ G+G R + L FA+ R K
Sbjct: 336 GPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFV----GVGPSRVRDL-FATAR---KN 387
Query: 440 GPKLIILDEADAM 478
P +I +DE DA+
Sbjct: 388 APCIIFIDEIDAI 400
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQM 319
L YGPPG+GKTS + A A ++
Sbjct: 246 LLYGPPGSGKTSFLYALAGEL 266
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.19
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRT 427
++ YG PGTGKT A A Q + S +++ D G +VR Q+ + A +
Sbjct: 228 VILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD--GPRLVR-QLFNAAEEHS 284
Query: 428 IFKAGPKLIILDEADAMTN---DAQNALRRIIEK 520
P ++ +DE DA+ DAQ+ R I++
Sbjct: 285 -----PSIVFIDEIDAIGTKRYDAQSGAEREIQR 313
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILS-FASTRTI 430
+L YGPPG KT T AK + T + + ++ D+ +G + F R
Sbjct: 585 VLLYGPPGCSKTIT----AKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKAR-- 638
Query: 431 FKAGPKLIILDEADAMT 481
+A P +I DE DA+T
Sbjct: 639 -QASPSVIFFDEIDALT 654
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
+L YGPPGTGKT + A A +
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAE 336
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQM 319
L +GPPGTGKT T++ +Q+
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELN 361
L GPPGTGKT TIL + T SS L+ N
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS---SSQGLQFN 1321
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 239 NQLPHLLFYGPPGTGKT 289
N + +L YGPPGTGKT
Sbjct: 302 NHVKGILLYGPPGTGKT 318
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
+LF+GPPGTGKT A A +
Sbjct: 534 VLFFGPPGTGKTLLAKAIANE 554
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
+L YGPPGTGKT A A +
Sbjct: 261 ILMYGPPGTGKTLMARAVANE 281
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 29.5 bits (63), Expect = 0.43
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQF 337
+L YGPPGTGK T+LA A +T +F
Sbjct: 182 ILLYGPPGTGK--TLLARAVAHHTDCKF 207
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQM 319
+L YGPPGTGKT A A ++
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL 712
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.1 bits (62), Expect = 0.57
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 233 KENQLPHLLFYGPPGTGKTS 292
+E +LP+++ G PGTGKT+
Sbjct: 4 EERELPNIIICGTPGTGKTT 23
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.1 bits (62), Expect = 0.57
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = +2
Query: 110 KNNMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKT 289
K + E G +L + K +LD ++ ++ I+ Q + + GP G GKT
Sbjct: 89 KQGAALEEYGTDLTALAKQG--KLDPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKT 146
Query: 290 STILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 463
+ + A ++ + SM D R I + G ++S A R F+ K ++ D
Sbjct: 147 AIMEGLASRIIRGEVPESM------KDKRVIVLDLGALISGAKFRGDFEERLKSVLSD 198
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 245 LPHLLFYGPPGTGKTSTILACAKQMYTPQ----QFSSMVLELNASDDRGIGIVRGQI--- 403
L LF GP G GKT+ A A+ ++ +F + + R IG G I
Sbjct: 532 LASFLFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYE 591
Query: 404 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 520
S T + + +++ DE + +D N L +++++
Sbjct: 592 ESGELTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDE 630
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQM 319
+L YGPPGTGKT A A +
Sbjct: 169 VLLYGPPGTGKTLLARAVAASL 190
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.75
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 257 LFYGPPGTGKTSTIL 301
L GPPGTGKT TI+
Sbjct: 1149 LIQGPPGTGKTKTII 1163
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.00
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
++ YGPPGTGKT A A +
Sbjct: 216 IMLYGPPGTGKTLCARAVANR 236
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
+L +GPPGTGKT A A +
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 206
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 377 GIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVR 538
G+ + R Q L F++ + G ++I+DE D ALR + E +
Sbjct: 82 GLEVKRTQWLDFSTLGMVDLVGKNILIVDEVDDTRTTLHYALRELQRDVAEQAK 135
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQ 316
+L YGPPGTGK+ A A +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 248 PHLLFYGPPGTGKTSTILACAKQMYTPQ 331
P L GPPGTGKT T + + T Q
Sbjct: 408 PLSLIQGPPGTGKTVTSASVVYHLATMQ 435
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 185 DLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNA 364
D+ S+D++ + +K Q + G PG+GK ST+ A + + ++F S ++++
Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGK-STLCAILAKAWN-ERFGSEIVKIIP 66
Query: 365 SD 370
D
Sbjct: 67 MD 68
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 158 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQM 319
E R +LD ++ +D I+ + + + + G PG GKTS A+++
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRI 226
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQMY 322
LF GP GTGKT A A M+
Sbjct: 618 LFCGPSGTGKTLLTKALASFMF 639
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 104 CYKNNMTVGET-GQNLPWVEKYRPKRLDDLVSHDDI 208
C ++N+TV + Q L +++KY PK+ + L++ + +
Sbjct: 75 CRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSV 110
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 407 SFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQ 586
S R + P+L+ L E++ + A +ALR II + + + +I + K + A
Sbjct: 2015 SILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFN 2074
Query: 587 SR 592
+R
Sbjct: 2075 AR 2076
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 245 LPHLLFYGPPGTGKTSTILACAKQ 316
L +L G PG GKTS I A A++
Sbjct: 1559 LKPILLEGSPGVGKTSLITALARE 1582
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 194 SHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILAC--AKQMYT-PQQFSSMVLE 355
S DDI+ + + PH+L+ P G T + L+ KQ+YT Q+ ++LE
Sbjct: 188 SMDDILTNWDATSYGSPKPHVLYTIPTGQNPTGSTLSVERRKQIYTLAQKHDIIILE 244
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 107 YKNNMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGK 286
YKN ++ T +P + LD V + D + +N F K P +L P
Sbjct: 82 YKNALSAMITEPAMPAMRVNASPVLDQKVCNSDSLSELNDFTKSLIQPSMLMCEPKEKPD 141
Query: 287 TSTI 298
S+I
Sbjct: 142 ASSI 145
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 254 LLFYGPPGTGKTSTILACAKQMYTPQQFSSM 346
+L GPP TGKT+ + A+ + + F ++
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSLGSDTPFVTL 98
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 143 NLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL--LFYGPPGTGKTSTILA 304
+L ++ + LDD + + D+ + + + +L GP GTGKT T+ A
Sbjct: 1847 SLEFIYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGGSPIGPAGTGKTETVKA 1902
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 257 LFYGPPGTGKTSTILACAKQM 319
L G PGTGKT+TI + + +
Sbjct: 952 LILGMPGTGKTTTISSLIRSL 972
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 209 IKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY 322
++ IN K +L + +G G GK+S + AC MY
Sbjct: 597 LRQINFVAKNGELTCI--FGKVGAGKSSLLEACMGNMY 632
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 113 NNMTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTIN 223
+N+T G G + + +Y K +D L D +KT++
Sbjct: 72 DNVTQGLVGSDAQALAEYWQKTIDTLEHDDQAVKTLH 108
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 170 PKRLDDLVSHDDIIKTINQFMKENQLPH 253
P LDD+ +D + + IN F+K + H
Sbjct: 978 PLTLDDVTPNDTLREEINTFLKSKRNKH 1005
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Frame = +2
Query: 152 WVEKYRPKRLDDLVSHDDIIKTINQFMKENQL--PHLLFYGPPGT-GKTSTILACAKQMY 322
WV KY P + D + + I +++ +L P P + ++STI +C
Sbjct: 325 WVSKYAPSKTQDCCAFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSSKR 384
Query: 323 TPQQFSSMVLE 355
S E
Sbjct: 385 NEDSLSESDFE 395
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 134 FPQQSYCFYNSIFKSLLVCKYRYFNK 57
F + F+ SI +LV +YRY NK
Sbjct: 64 FKSLLFLFFVSICVVILVVRYRYLNK 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,796
Number of Sequences: 5004
Number of extensions: 53302
Number of successful extensions: 231
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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