Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e22
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 193 Y*IIQSFWAIFFNPW 149
           Y ++++ W+ F NPW
Sbjct: 384 YVVLETEWSSFINPW 398



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 299 LACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK 436
           L+ ++ M  PQQ   M L ++       G++   ++   ST  ++K
Sbjct: 814 LSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYK 859


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 193 Y*IIQSFWAIFFNPW 149
           Y ++++ W+ F NPW
Sbjct: 90  YVVLETEWSSFINPW 104


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 395 GQILSFASTRTIFKAGPKLIILDEADAM 478
           G++L F     +  +  + ++LDEAD M
Sbjct: 332 GRLLDFVEKGRVKFSSVQFLVLDEADRM 359


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 628 ILLERGKTKSRTP 590
           ++LER KTKS++P
Sbjct: 78  LVLERSKTKSKSP 90


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/55 (25%), Positives = 18/55 (32%)
 Frame = -2

Query: 302 LEW*MSSRFQEDRRIVDVGAXXXXXXXXXXXLYHHEILNHPIFLGDIFQPMANFG 138
           + W      + D R  + G              HH IL H  FL +  Q    FG
Sbjct: 253 ISWHQKELVRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQKRYFFG 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 572 IPALQSRCTRFRFAPLKQD 628
           +P + S C    + PLK+D
Sbjct: 185 VPTVTSACVGSAYTPLKED 203


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 475 YDK*RSECTKENYREVHRECKV 540
           YD+ + E + ENY   H+E  +
Sbjct: 176 YDRYKEEESNENYNWEHKETHI 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,449
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)