Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e20
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0834 - 20167554-20167716,20169488-20169598,20169716-201698...    32   0.38 
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    29   2.6  
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379     29   4.6  
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130...    28   6.1  
12_01_0545 - 4302369-4302926                                           28   8.1  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    28   8.1  

>04_03_0834 -
           20167554-20167716,20169488-20169598,20169716-20169801,
           20169901-20170011
          Length = 156

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +3

Query: 123 HLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLT 302
           H+  F+FI   M   V    Y  +   +ND A + + ++EKP  ++ L+ L    ++R  
Sbjct: 13  HISYFIFILKQMECNVRAENYICTIEIRNDFAILSYFSIEKPLDLDTLSWLLRHGEERGK 72

Query: 303 EPKLKSLYSDLMLHDKEEI-TYKRFKSDGG 389
             + K++   L++     I   +R K  GG
Sbjct: 73  HMECKAVAKALLMACNLPIGRRERVKDRGG 102


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 459 LEHFDPKADRQKDHPAFNSAMDDHINRSIFKDKKLNM---LWSKAEFSGFTAEELSALKE 629
           LE  D       +   +++ +  +IN    +D+ + M   L   ++  GF+ E+ S L  
Sbjct: 259 LEQSDQSNITTGNRDLYHAQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKSSNLSN 318

Query: 630 EFLHHQE 650
            F+HHQ+
Sbjct: 319 HFMHHQQ 325


>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
          Length = 881

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 522 DDHINRSIFKDKKLNMLWSKAEFSGFTAEELSALKEE 632
           DD +N  +   KK+ MLWS+ + +    E  + +KEE
Sbjct: 95  DDKVNIVLKMAKKIRMLWSRHQIANQIQELKARVKEE 131


>09_06_0108 -
           20912236-20912364,20912470-20912601,20912718-20913071,
           20913161-20913407,20913489-20913565,20913971-20914045,
           20914118-20914219,20914329-20914447,20914861-20914984,
           20915081-20915131,20915247-20915345,20915839-20915949
          Length = 539

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 354 EITYKRFKSDGGDKEGLKEAELRRK 428
           E+TYK FK +  +KEG+  A++  K
Sbjct: 385 EVTYKPFKEEDMEKEGIDNADVVEK 409


>12_01_0545 - 4302369-4302926
          Length = 185

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +3

Query: 315 KSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQK 494
           + L  +L   D   +  +    DGGD    +E  L         V  +LEH     +   
Sbjct: 85  RHLEDELGEDDAAGVVGEERAGDGGDDADAEEEVLAAAALPGEHVAEVLEHVGALQEDGD 144

Query: 495 DHPAFNSAMDDHINRSI 545
           DH A   A D  ++RSI
Sbjct: 145 DHGAEEEAEDGEVDRSI 161


>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
            20878057-20878177,20878414-20878451,20879096-20879218,
            20879308-20879505,20880270-20880356
          Length = 1578

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
 Frame = +3

Query: 177  NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKL-KSLYSDLMLHDKE 353
            NK    ANE N D+ V+    E P   +K+ LL T+  + L E KL +      M   K 
Sbjct: 1465 NKQGNDANE-NGDSPVN----EVPELQSKIQLLETRLAEALEENKLYRGQLKSPMPEGKS 1519

Query: 354  EITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQK 494
                K  K +  DK    E+EL+     +++V   L++ + +A R++
Sbjct: 1520 --ASKDGKENDDDKISQLESELKDMQERLLNV--SLQYAEVEAQREE 1562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,883
Number of Sequences: 37544
Number of extensions: 240931
Number of successful extensions: 510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)