Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e19
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 29 0.49
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 27 2.6
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 2.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 2.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 2.6
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 3.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 3.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 7.9
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.9
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 7.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 7.9
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -3
Query: 328 SIASLCGRFLRLHDTYYRFICTWRYGWILYFFDTNCNAGGWWW 200
S+ S C F HD C W + YFF + W+W
Sbjct: 244 SVLSSCALFKIFHDNDNTKACNWTISRLRYFFIVFVASFIWYW 286
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 166 DTSFFLLFYSLQGARVWWRWLRY-WFDI 86
+TSFFL + + R WWR+L Y W+++
Sbjct: 63 NTSFFL--HPFKKIRFWWRYLFYGWWNL 88
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 598 LSVESTVEQQIESSKNFDKHLNELETLIKQLKDDI 702
LSV+ST+E+ K D +N + ++ KD++
Sbjct: 290 LSVDSTIEKNASEQKKDDNSVNPFTKIEEKKKDEV 324
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 106 ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 264
A +KP+ A +K SW + + + +T TTS LR + ++ R K
Sbjct: 182 ANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEK 234
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/70 (24%), Positives = 39/70 (55%)
Frame = -2
Query: 680 IKVSNSFRCLSKFFEDSICCSTVDSTLNVLVLAHSPNS*QNLSLTFSIIESILLLITVFS 501
+ +S+S S++ SI +TV S+ + + P+S Q +S + S +++++ ++ S
Sbjct: 78 LSISSSSSTSSEYSSSSIPITTVSSSDSFI-----PSSSQTISASSSTTDNVIVSSSISS 132
Query: 500 ILSMVTLSTV 471
+S +ST+
Sbjct: 133 TVSSTPVSTI 142
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/90 (17%), Positives = 41/90 (45%)
Frame = +1
Query: 412 RPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANT 591
+P R++ ++++NR+ + + AT + I ++ ++ ++ ++R
Sbjct: 402 KPFRKSRKQSKNRKNKSSVATQFSEESEDIADSITSSTFFPVLPQIRPSTPLNL----KL 457
Query: 592 RTLSVESTVEQQIESSKNFDKHLNELETLI 681
R + S+ + +K FD+ L E L+
Sbjct: 458 RNFIISSSEDSTSPKAKEFDRPLPSTEFLV 487
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 695 SFNCFIKVSNSFRCLSKFFEDSICCSTVDSTLNVLVLAHSPNS 567
S N K F CL + +S ST+ + L++A+ NS
Sbjct: 570 SNNFITKARLGFHCLQMIYRESTYYSTIMEAIKNLLIAYDMNS 612
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 158 LFPFVLFVARCKGLVEVAQVLVRHC 84
++P A+ GL E AQ ++ HC
Sbjct: 761 MYPIAYLTAKSNGLEEKAQQILSHC 785
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.9
Identities = 5/21 (23%), Positives = 13/21 (61%)
Frame = -3
Query: 250 WILYFFDTNCNAGGWWWRLFY 188
W+L+++ C + GW++ +
Sbjct: 528 WVLFYYYRGCQSWGWYYNYHF 548
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 211 GWWWR--LFYRNPWTYFDTSFFLLFYSLQ-GARVWWRWLRYWF 92
GW+W +++ + W F S A +WW ++ WF
Sbjct: 68 GWFWTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMFVTQWF 110
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 598 LSVESTVEQQIESSKNFDKHLNELETLIKQL 690
LS EST Q+++S N DK N++ETL +++
Sbjct: 808 LSEESTRLQELQSQLNQDK--NQIETLNERI 836
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,067
Number of Sequences: 5004
Number of extensions: 56157
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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