Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e19
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744... 32 0.38
02_02_0448 + 10370493-10370568,10370687-10370727,10372372-103724... 30 2.0
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 2.7
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 29 2.7
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457... 29 3.6
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 29 4.7
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379... 29 4.7
12_01_0943 - 9324181-9325095,9326671-9326853 28 6.2
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698... 28 8.3
09_04_0539 - 18416184-18416830,18417983-18419057 28 8.3
08_02_0669 + 19868149-19870179 28 8.3
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713... 28 8.3
>12_01_0811 -
7440413-7440712,7441285-7441398,7441448-7441705,
7441825-7441998,7442344-7442514,7442607-7442874,
7443171-7443937,7444437-7445123
Length = 912
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +1
Query: 508 TVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQ---QIESSKNFDKHLNELETL 678
+VIN K+DS E+V++ Q+ +TRT + + Q +I +++N D + ELE
Sbjct: 348 SVINKKVDSQKEEVKEVDSQDIAVSNDTRTDTYDGAQAQVPIRISNNRN-DTKVRELELR 406
Query: 679 IKQLKDDI 702
++ L+ ++
Sbjct: 407 VELLEAEL 414
>02_02_0448 +
10370493-10370568,10370687-10370727,10372372-10372441,
10372530-10372678,10373177-10373272,10373347-10373417,
10373547-10373608,10373797-10373860,10374107-10374191,
10374281-10374407,10374494-10374567,10374804-10374858,
10374961-10375085,10375297-10375452
Length = 416
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 467 FVFCTLRFSVSSAVLRKGRILVEVEV---KGWAHNQARVDQGVQQLHPK*HRISLWSFSP 297
FV+C RFS+ + ++ +++ VE KG+ H + D + L K +++ + F
Sbjct: 93 FVYCGRRFSLKTVLMLADQMITRVEFMHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGL 152
Query: 296 VARH 285
R+
Sbjct: 153 AKRY 156
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 208 WWWRLFYRNPWTYFDTSFFLLFYSLQGARVWWRW 107
+WW +F + T + +F++ F+ L WW++
Sbjct: 177 FWWYIFEQTVLTVWTVAFYIQFFYLGIVVSWWKF 210
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 478 LRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKH 657
L MDR +K S++EKV+ K +F A+ + +++ E +N +K
Sbjct: 155 LDADMDRFIKAQSERLRQSILEKVQAK---QFEALASVEDKILRKIRDKEAEV-ENINKR 210
Query: 658 LNELETLIKQLKDDI 702
+ELE IKQL ++
Sbjct: 211 NSELEDQIKQLAVEV 225
>02_03_0333 +
17843605-17843661,17843713-17843881,17845606-17845723,
17845725-17846358,17846457-17846526,17847680-17847804,
17848146-17848270,17848638-17848730,17849714-17849753
Length = 476
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 148 KGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSKCK*TYSMC 288
KG++++ + + C T+T P + + + + TR +KCK C
Sbjct: 381 KGETYHLSRCTEICTITSTFVPRSLDYEKTDAQGTRQNKCKVVLHSC 427
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 280 YRFICTWRYGWILYF-FDTNCNAGGWWWRLF 191
Y F + GW++Y F G WW RLF
Sbjct: 183 YTFGVIFNMGWLIYGDFKAGFERGPWWQRLF 213
>02_01_0524 +
3798019-3798265,3798419-3798651,3798765-3799014,
3799104-3799249,3799372-3799577,3799721-3799845,
3800154-3800734
Length = 595
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 163 YQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 264
YQ M ++ CR T L N+Y K K+ + K
Sbjct: 268 YQRMKRERCRANTETFTLMINVYGKAKQPMSSMK 301
>12_01_0943 - 9324181-9325095,9326671-9326853
Length = 365
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 526 IDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIES 636
++S EK+RD+FC F L VE +QIE+
Sbjct: 155 VNSSWEKLRDRFCLAFFPVTRITALQVEILSFKQIEN 191
>12_02_0592 +
20868884-20868954,20869091-20869216,20869554-20869862,
20870017-20870300,20870410-20871305,20871586-20871642,
20872293-20872340,20873046-20873114
Length = 619
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 311 WSFSPVARHIL*VHLHLEVRVDSLFFRYKLQRRGLVVAVVL 189
W P+ RHI+ +H+ E + + LQ+RG +VL
Sbjct: 87 WVDDPITRHIISLHIDKEEGEGFMLWPVVLQKRGSYYILVL 127
>09_04_0539 - 18416184-18416830,18417983-18419057
Length = 573
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +1
Query: 475 VLRVTMDRILKTVINNKIDSMIEKVRDKFCQE----FGECANTRTLSVESTVEQQIESSK 642
V + M R + I N+I IE +R++ C+ E + + + + E+ E K
Sbjct: 343 VQSIAMLRSAEEAIENEIQKFIE-MRNETCENSANNHSETEWSSSCHFDESTEELSEKLK 401
Query: 643 NFDKHLNELETLIKQLKDDI 702
+ LNE TLI +I
Sbjct: 402 LLESRLNEASTLINDKDSEI 421
>08_02_0669 + 19868149-19870179
Length = 676
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 64 KLTHENLQCRTST*ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATT 207
++ E LQC T T P+ LAT +T ++ + K CRT T
Sbjct: 267 RINPEGLQCPI-TLELMTDPVTLATGQTYDRASIKRWVKSGCRTCPVT 313
>05_01_0012 -
70296-70398,70494-70648,70737-70843,71138-71216,
71343-71423,71556-72581
Length = 516
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 193 FYRNPWTYFDTSFFLLFYSLQGARVWWRWLRYWFDIADF 77
+YR+ W + LL GA WW W+ W + A F
Sbjct: 25 WYRSWWKTTEAGGPLLPPPAAGAGPWWVWVWQWRETAAF 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,039
Number of Sequences: 37544
Number of extensions: 348368
Number of successful extensions: 1153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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