Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e19
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   3.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 397 TSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDK 558
           T  +I+   + A+E     +QK     L  T    L+    N+++ ++   RDK
Sbjct: 159 TYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDK 212


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 701 MSSFNCFIKVSNSFRCLSKF 642
           +S  N  +K++  F+C++KF
Sbjct: 107 ISDTNVHLKITKIFQCITKF 126


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 GKSWYQNMSKDSCRT 195
           GK  YQ MS+D  RT
Sbjct: 404 GKENYQTMSRDPART 418


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 585 STLAKFLTKFISDFLYHRIY 526
           ST++ +L  F+  F Y++IY
Sbjct: 211 STISFYLPLFVMVFTYYKIY 230


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 GKSWYQNMSKDSCRT 195
           GK  YQ MS+D  RT
Sbjct: 404 GKENYQTMSRDPART 418


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 701 MSSFNCFIKVSNSFRCLSKF 642
           +S  N  IK+S  F+C  K+
Sbjct: 107 ISDANVHIKISKIFQCFMKY 126


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 137 VARCKGLVEVAQVLVRHCRFSWV 69
           V  C GL  V ++ V  C   W+
Sbjct: 239 VGNCDGLTSVFRIQVDECDRLWI 261


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 644 FFEDSICCSTVDSTLNVLVLAHS 576
           F  +S+C ST  S     VLAH+
Sbjct: 628 FLNNSMCTSTTTSPDKEHVLAHN 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,591
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)