Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e18
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.60
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 28 1.0
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 28 1.4
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 28 1.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 4.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.7
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.7
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 469 YVPKPSILRESFKPAPKFHCVDQPFENRTINKLSYLPPEKIDMPKSFAP 615
Y P + +F P P H D + + +N+ ++LP E P + P
Sbjct: 142 YYPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFLPREGTPPPFAQQP 190
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 434 VPCRTSPHNDTTTCPSRVYYERALSQHRNFTASTNHLKI 550
+P R H+D+T C +R+ ++AL R + ST+ ++
Sbjct: 355 IPMRVC-HSDSTLCDARIAAKQALKGKRQYDTSTSKAEL 392
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 178 PESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 288
P YAP C +A + C T LS +P D K R
Sbjct: 317 PSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKR 353
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +1
Query: 259 LPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCH--HDMWGQ 432
LP D + + ++ PNI+PS E + + + P T +I H W
Sbjct: 41 LPTDPKASSLHKPQEQQPNIIPSKEEDKKPVINSMKLPSIPAPGTDNINESHIPRGYWKH 100
Query: 433 GPMQNITTQRHDYVP 477
+ I + HD P
Sbjct: 101 PAVDKIAKRLHDQAP 115
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 446 TSPHNDTTTCPSRVYYERA-LSQHRNFTASTNHLKIGQ*INYLIYRPRKLICRNRLRPSV 622
T+ H T +++ RA L + RN + + +N LI P+K + +NR + +
Sbjct: 84 TTTHIATRWDANKLLLARAILKEKRNILQDKTSVNVN--VNKLIPIPKKKVLKNRAKSLL 141
Query: 623 AMKSRL 640
++KS +
Sbjct: 142 SIKSHV 147
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = +1
Query: 415 HDMWGQGPMQNITTQRHDYVPKPSI----LRESFKPAPKF 522
HD+W + ++ DY P P + ES+ P ++
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 237 ASLYGG*WFYVASSRRVRLWDFWLLV 160
+S+YG W ++ S+ V W +LLV
Sbjct: 2200 SSVYGRSWAFMWSAHNVHKWAMFLLV 2225
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Frame = +1
Query: 169 PKIPESYAPRRC--------YIKPSAPVEGCTTYKLSYLPVDGCKNLRGEVKKPSPNIVP 324
P+IP +Y P++ P+ P + T +L +P NL +V P P P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP-MPSRNVNNLGSQVNIPPPPATP 279
Query: 325 SCEP 336
S P
Sbjct: 280 SQPP 283
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 439 MQNITTQRHDYVPKPSILRESFKPAPKFHCVDQPFENRTINKLSYLPPEKIDMPKSF 609
++N T+ DY+P+P IL C D ++ LPP I+ SF
Sbjct: 623 LENGNTKWMDYLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLPPIMIESKASF 679
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 305 LRPTLYRAVNLWKGVPFKS 361
LRP Y+ N W G PF++
Sbjct: 347 LRPHAYQHFNTWMGDPFRA 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,620
Number of Sequences: 5004
Number of extensions: 68551
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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