Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e18
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 30 1.4
05_03_0326 - 12444830-12445074,12445218-12445425 30 1.9
01_06_1608 - 38612754-38616947,38617030-38617095 29 2.5
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 29 4.4
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 5.8
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 5.8
11_01_0047 + 358370-360107,360713-361353 28 7.6
08_01_0070 + 490655-493165 28 7.6
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 7.6
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 YRSKVVIPTEPGVRDAVDPALPPRHVGPG-SHAEHHHTTTRLRAQAE 485
Y+S P++ V +PALPP PG SH E +HT + + ++
Sbjct: 88 YKSMSENPSQTFVYRVKNPALPPTLRQPGWSHGEEYHTVRAIGSSSK 134
>05_03_0326 - 12444830-12445074,12445218-12445425
Length = 150
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 392 RSRSGPATTT-CGARVPCRTSPHNDTTTCPSRVYYERALSQHRN 520
++R G AT+ C ARV CR++P + PS VY R ++HR+
Sbjct: 105 KTRLGVATSRPCVARVQCRSAPLPPRSLFPS-VYLGRLGNRHRD 147
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 335 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 252
GS +G+ LG G S RF+H +GR++
Sbjct: 1259 GSDVGSSLGSGGDMSQPRFIHNESGRFE 1286
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 369 PTEPGVRDA-VDPALPPRHVGPGSH 440
P++P +R DP P RH GP SH
Sbjct: 22 PSQPALRSLNQDPPKPARHTGPRSH 46
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 335 GSQLGTMLGEGFFTSPRRFLHPSTGRYD 252
GS +G LG G S RF+H +GR++
Sbjct: 1255 GSDVGGSLGSGGDMSQPRFIHNESGRFE 1282
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +1
Query: 358 KLSYLPNPVCVTQSIRPCHHD-MWGQGPMQNITTQRHDYVPKPSILRESFKPAPKF 522
K L +PV T IRP H D W P +Q Y + + S PKF
Sbjct: 192 KRDRLRSPVRTTSDIRPRHTDSRWSHSPRSAPRSQSKGYYNERPLDGRSHDDMPKF 247
>11_01_0047 + 358370-360107,360713-361353
Length = 792
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 422 CG--ARVPCRTSPHNDTTTCPSRVYYERALSQHRNFT 526
CG A VPC TSP + S A +HR FT
Sbjct: 360 CGYSASVPCPTSPSPSPSAPASPAQSREATGRHRKFT 396
>08_01_0070 + 490655-493165
Length = 836
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 274 CKNLRGEVKKPSPNIVPSCEPMEGC---TVQKLSYLPN 378
C++L G V P+P P P+ GC TV++LS L N
Sbjct: 442 CRDLEGAVIMPAPEASPPPPPL-GCEEFTVKELSRLTN 478
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 27.9 bits (59), Expect = 7.6
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Frame = +1
Query: 67 QFISYFDIF--LELYFLYDNFG--RNILPINHA*CYKQPKIPESYAPRR---------CY 207
Q + YFD+ L L +FG ++L +N A C++ +P S+ CY
Sbjct: 602 QKLQYFDLSGCANLNELPTSFGDLSSLLFLNLASCHELEALPMSFGNLNRLQFLSLSDCY 661
Query: 208 IKPSAPVEGCTTYKLSYLPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVC 387
S P C + L++L + C NL G++ + E + + K+ LP +C
Sbjct: 662 KLNSLPESCCQLHDLAHLDLSDCYNL-GKLPDCIDQL-SKLEYLNMTSCSKVQALPESLC 719
Query: 388 VTQSIR 405
+R
Sbjct: 720 KLTMLR 725
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,763,174
Number of Sequences: 37544
Number of extensions: 483291
Number of successful extensions: 1299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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