Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e18
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024798-3|AAP86612.1|  361|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006747-7|AAF60511.1|  331|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z49071-5|CAA88879.1|  609|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AY305841-1|AAR11986.1|  147|Caenorhabditis elegans nuclear recep...    27   9.0  
AL132948-27|CAC51046.1|  373|Caenorhabditis elegans Hypothetical...    27   9.0  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   9.0  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   9.0  
AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    27   9.0  

>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
            ZK512.5 protein.
          Length = 1232

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 295  VKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSI----RPCHHDMWGQGPMQNITTQR 462
            VK P P +     P+    +     +P P  V  SI    R    D+W   P  N T+  
Sbjct: 949  VKPPMPTLSMPIPPVSTPIMVSPQPIPIPKPVDASIAKSPRSELDDLWDTSPPSNQTS-- 1006

Query: 463  HDYVPKPSILRESFKPAPKF 522
              Y P P  ++ S+ PAP F
Sbjct: 1007 --YPPAPRNIQPSYSPAPNF 1024


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = -2

Query: 292 LPVGFCIRRQVDTTACKSC----IPLRGLMVLCSIVSARTTLGFLVACNIRHDLSVKCFS 125
           LP  FC    +D  A KSC      L   ++L   V  + T+ F   C +     ++  +
Sbjct: 97  LPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEVRFQLTMKFERNCGVFSKAEIQTLA 156

Query: 124 QNYRIKSIVLRKY 86
           + Y +    +++Y
Sbjct: 157 EKYNMTCKQIKQY 169


>AC024798-3|AAP86612.1|  361|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9b protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 299 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RSRSGPATTTCGARV 436
           + LR  L +  N W  +GVP + CHT   R   + R GP    C A +
Sbjct: 231 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 277


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 299 RNLRPTLYRAVNLW--KGVPFKSCHTYRTRCA*RSRSGPATTTCGARV 436
           + LR  L +  N W  +GVP + CHT   R   + R GP    C A +
Sbjct: 222 KELRVNLIKWPN-WPDRGVPDEKCHTVPQRLLAQVRHGPCVVHCSAGI 268


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 436 PMQNITTQRHDYVPKPSILRESFKPAPKFHCVDQPFENRTINKLSYLPPEKID 594
           P QN+ T R+  +P P I    F     F      F  +T  +  YLP E++D
Sbjct: 84  PAQNLVTTRNFIMPPPDIAVCFFFSRFFFKIETTYFPTKTTFQEGYLPDEEMD 136


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
 Frame = +1

Query: 334 PMEGCTVQKLSYLPNPVCVTQSIR-PCHHDMWGQGPMQNITTQRHDYVPKPSILRESFKP 510
           P  G T  K  Y       +  +R P + +M+  GP    TT + DY  K     E  K 
Sbjct: 258 PFNGQTTNKSDYDQKQAERSGILRGPTNTEMFS-GPFNGQTTNKSDYDQKQVGRSEILKG 316

Query: 511 APKFHCVDQPFENRTINKLSY 573
                    PF+  T NK  +
Sbjct: 317 PANTEMFSGPFDGITTNKADF 337


>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical
           protein C15A11.1 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 433 PGPTCRGGRAGSTASRTPGSVG 368
           PGP  + G AG+T++  PGS G
Sbjct: 165 PGPNGQPGAAGTTSTNEPGSPG 186


>AC006747-7|AAF60511.1|  331|Caenorhabditis elegans Hypothetical
           protein Y39A3A.4 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 344 GVPFKSCHTYRTRCA*RSRSGPATTTCGA 430
           GVP + CHT   R   + R GP    C A
Sbjct: 230 GVPDEKCHTVPQRLLAQVRHGPCVVHCSA 258


>Z49071-5|CAA88879.1|  609|Caenorhabditis elegans Hypothetical
           protein T22C8.7 protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 408 LPPR--HVGPGSHAEHHHTTTRLRAQAEYTTREL*ASTEISLRRPTI*KSDN 557
           LPPR  +   GS      TTTR RAQA  TT     +T  SL+  T+ + ++
Sbjct: 309 LPPRTENTSEGSTTTVRSTTTRERAQAFSTTTHK-TTTSSSLQLKTVQRDED 359


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = -2

Query: 220 LMVLCSIVSA--RTTLGFLVACNIRHDLSVKCFSQNYRIKSI-VLRKYQ 83
           L  LC++++   R +   +VAC  R++ S++CF  + ++  + ++ K++
Sbjct: 281 LASLCNVLNLLLRHSKAAIVACTRRNESSIECFEHHLKMAKLEIVEKFE 329


>AY305841-1|AAR11986.1|  147|Caenorhabditis elegans nuclear receptor
           NHR-125 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 488 YYERALSQHRNFTASTNHLKIGQ*INYLIYRPRKLICRNRLRPSVAMKSRLPK 646
           YY   ++  R F   T  LKI Q I +    P+K I  N ++       +L K
Sbjct: 83  YYVNEMNNSRYFLRLTQLLKINQAIQFSDISPQKQIRNNIIKKEAEKLEKLQK 135


>AL132948-27|CAC51046.1|  373|Caenorhabditis elegans Hypothetical
           protein Y39B6A.35 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 487 ILRESFKPAP--KFHCVDQPFENRTINKLSYLPPEKIDMPKSFAPERCYEK 633
           +L E+F P P  K  C+  PF  +T+    +L  + ID+  S  P +  E+
Sbjct: 236 LLEETFSPLPPTKLRCISGPFNPKTV---LFLVQQGIDLFDSSFPVKLAEE 283


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 416 TTCGARVPCRTSPHNDTTT-CPSRV 487
           +TCGA+  C    + DTT  CP RV
Sbjct: 552 STCGAQFWCHFGANQDTTVCCPGRV 576


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 416  TTCGARVPCRTSPHNDTTT-CPSRV 487
            +TCGA+  C    + DTT  CP RV
Sbjct: 970  STCGAQFWCHFGANQDTTVCCPGRV 994


>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 488 YYERALSQHRNFTASTNHLKIGQ*INYLIYRPRKLICRNRLRPSVAMKSRLPK 646
           YY   ++  R F   T  LKI Q I +    P+K I  N ++       +L K
Sbjct: 335 YYVNEMNNSRYFLRLTQLLKINQAIQFSDISPQKQIRNNIIKKEAEKLEKLQK 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,034
Number of Sequences: 27780
Number of extensions: 411281
Number of successful extensions: 1160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)