Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e14
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    28   1.00 
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    27   3.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   3.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   4.0  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   4.0  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   7.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.0  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    25   7.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.3  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   9.3  

>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +1

Query: 82  KLYIDKKKIKMENLKNIWKPELYRIQMEAPVPKRVPCDHCPDRPKFYGKE 231
           + Y+ K+   +   +     + Y ++M+AP PK    +H P + + + +E
Sbjct: 143 QFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYSTDNHLPSKKELFPRE 192


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 579 SFEQVKSNIKQN*IEKSLKLI 641
           SFE  KSNI QN +E  +K++
Sbjct: 111 SFETAKSNILQNNMESQIKIV 131


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 244  ECHEILSRKT*VYPDNGHK 188
            +CH+ LS KT ++PD+ H+
Sbjct: 1666 DCHDSLSWKTFIHPDHHHQ 1684


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   FTFLSFNYKRSMLWQN 50
           + ++SFNYK   LW+N
Sbjct: 775 YLYISFNYKTRQLWRN 790


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  FILIKKKSKWRT*KIFGNQSCIVFKWKLLYRSGFLVTIVRI 208
           FIL   K KW    I  + +C V    LLY   +LV +++I
Sbjct: 164 FILSSCKKKWVRASILLSVACSVKMSSLLYVPAYLVLLLQI 204


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 363 NFVIESPSQCVKVVVGIPFSNQEGTVRF 280
           NF++ + S+  K V+GI F NQ  ++ F
Sbjct: 14  NFIM-ADSEEYKTVIGISFGNQNSSIAF 40


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 471 KSSSYTGDDQLKGQLHG 521
           K SS+TG+D ++ QLHG
Sbjct: 89  KPSSFTGEDVVELQLHG 105


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 213 RSIRTMVTRNPLRYRSFHLNTIQLW 139
           RSI    TR    Y S H   +QLW
Sbjct: 424 RSIHVPKTRKDTDYESIHQKLLQLW 448


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 382 YDGTHYIKDKRYDTIYDLVADGLITC-HMEIKAHHILEMINSRANYTDSPYVTLNRRKL 555
           ++ +  I   RY+T+++L+ADG  T  H  +     + ++N + +  +  + TL +  L
Sbjct: 283 FNSSFLILGSRYNTLHNLLADGDFTLFHFTLFLLSKIILLNLKISDYEKAFSTLQQALL 341


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 222 VKLRSIRTMVTRNPLRYRSFHLNTIQLWFPNIFQVLHFDFFFIN 91
           + ++S    V RN L      +NT + WF      L   F FI+
Sbjct: 58  IYIKSTHVPVQRNQLFVDKQSINTSRSWFRAFLSFLSICFLFIS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,335
Number of Sequences: 5004
Number of extensions: 58072
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)