Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e14
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 31 0.59
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 30 1.4
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 2.4
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 29 4.1
01_06_1539 + 38107108-38109649,38110563-38110915 29 4.1
12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477 28 5.5
04_01_0057 + 590605-591201 28 7.2
03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205... 27 9.6
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 27 9.6
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 112 MENLKNIWKPELYRIQMEAPV 174
+E L + W PEL R+Q+EAPV
Sbjct: 72 LERLSSFWFPELRRLQLEAPV 92
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 YIDKKKIKMENLKNIWKPELYRIQMEAPV 174
Y + +E L W PEL R+Q++APV
Sbjct: 93 YACDRPATLERLSTFWLPELRRLQLKAPV 121
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = -3
Query: 468 LHVAGNESIRNKVIYSVITFIFYVMCSIIVKFIMMNFVIESPSQCVKVVVGIPFSNQEGT 289
+HV N + K+I ++TF FY C II I + V CV + I N GT
Sbjct: 339 IHVIYNFFLIRKIIAHIVTFAFY--CLIIPATIFVPEVRIPKWGCVYIPTIITLLNSVGT 396
Query: 288 VR 283
R
Sbjct: 397 PR 398
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 82 KLYIDKKKIKMENLKNIWKPELYRIQMEAPVPKRVPCDHCPDRP 213
+L +D +E L+ ++ P+L R+ ++AP + + HC + P
Sbjct: 276 RLRLDAVAGTLEELRLVYLPDLRRLHVDAPGLRLLRVGHCDNLP 319
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 106 IKMENLKNIWKPELYRIQMEAPVP 177
I + NL+N+WK ELY+ + +P
Sbjct: 230 IAISNLRNLWKIELYQNNLTGEIP 253
>12_02_0582 - 20789739-20790182,20794940-20796120,20796450-20796477
Length = 550
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 82 KLYIDKKKIKMENLKNIWKPELYRIQMEAPVPKRVPCDHCPDRP 213
+L++D +E L+ ++ P+L R+ ++AP + + HC + P
Sbjct: 282 RLHLDAADA-LEELRLVYLPDLLRLHVDAPGLRLLRVGHCDNLP 324
>04_01_0057 + 590605-591201
Length = 198
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = -3
Query: 462 VAGNESIRNKVIYSVITFIFYVMCSIIVK 376
VAG++ RN ++ +++F FY++ S++ +
Sbjct: 49 VAGDDIARNFFLFEILSFGFYLLSSLVAQ 77
>03_01_0266 -
2057354-2057638,2057762-2058022,2058342-2058778,
2058889-2059213
Length = 435
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 441 RNKVIYSVITFIFYVMCSIIVKFIMMNFVIESPSQCVKVVVGIPFSNQEGTVRFI 277
RN+++ +T I I FI F + P + V+G+PF G F+
Sbjct: 361 RNELLGLQLTLIIASFGIAINTFIAAAFAMNIPHRGYHFVIGVPFGQFVGATSFL 415
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 343 KSVCKSRCRDSLF*SRRHRSVHFLTTVWLPYVLECHEI 230
+ VC SRCR S + S++H+ +H+ + ECH+I
Sbjct: 151 EKVC-SRCRKSSYCSKKHQELHWRA----KHKNECHQI 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,335
Number of Sequences: 37544
Number of extensions: 330100
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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