Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e12
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       30   1.6  
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304...    29   2.1  
03_05_0145 + 21254448-21255488                                         29   2.1  
03_02_0091 + 5574528-5577254                                           29   2.8  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    29   3.7  
11_01_0611 - 4894342-4895448                                           29   3.7  
04_04_0881 + 29055724-29059197                                         29   3.7  
11_06_0284 + 21909758-21913645                                         28   6.5  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   6.5  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 302 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 442
           A P     R+    RR  D PRPAR   H +VTL   H  S    +R
Sbjct: 79  ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125


>09_02_0020 +
           3042502-3042980,3043068-3043176,3043290-3043476,
           3043690-3043784
          Length = 289

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 424 PPRNTTVLEKKVGRWKQRSGGGWLQKKG*KRKSVKEN*KP*IARW 558
           PP+ +   E++ G W +RS   W +++G KR+  K + +  I RW
Sbjct: 115 PPKQSDAGEERRGAWSRRSSEMW-ERRGEKRRGRKGSMR--IQRW 156


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 452 KKSADGNSGAEEGGSKKKDENENQLKRTKS 541
           K+S +GN GA  GG+ K+D  E   +R  S
Sbjct: 218 KRSLNGNGGAYGGGAAKRDPGERSGRRPDS 247


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 146 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 295
           + L   V  AALW   ++  A  R  VC G +S     K   FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 114 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDS 293
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +      +
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599

Query: 294 LP 299
           +P
Sbjct: 600 VP 601


>11_01_0611 - 4894342-4895448
          Length = 368

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 476 GAEE--GGSKKKDENENQLKRTKSRELRGGIMYYSC 577
           G EE   G ++++++  +L RT+S ELR G+  + C
Sbjct: 305 GEEETKNGKQEQEDDHVELLRTRSGELREGVEMFDC 340


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 410  CHN-GSHLATLRF*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 556
            C+N G+ LA LR     S+DG    EEG  +K+ E+  ++K      LRG
Sbjct: 867  CYNDGTVLAILRL-PSTSSDGAVVIEEGSFRKEAESLGKVKHRNLTVLRG 915


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 449 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRGG 559
           ++K  + N G EE G ++  E E + ++ K ++ +GG
Sbjct: 433 ERKEEEKNEGEEENGEEEGKEKELKGRKDKEKKEKGG 469


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 131 PPFACILLQSCVLHAAL 181
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,572
Number of Sequences: 37544
Number of extensions: 326769
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)