Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e12
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    29   2.6  
U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 455 KSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 556
           +S DG+ G EEG S KK++  N LKR    E  G
Sbjct: 110 QSRDGDEGEEEG-SDKKEKKGNPLKREHGDEGEG 142


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 408  NVTMVATSQHYGFRKKSRPMETAERRRVAPKKRMKTKIS*RELKAV 545
            NV +VA S    +RK+ +   T + + VAPKKR  + +    L AV
Sbjct: 1285 NVPVVAQSARRAYRKRIKT--TTDAKTVAPKKRSSSSMRSESLPAV 1328


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 443 F*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 556
           F KK+  +GN G +    +   ENE Q KR K R+  G
Sbjct: 777 FKKKRRENGNEGGDNDVCRICCENERQEKREKKRKSSG 814


>U53180-2|AAK68284.1|  477|Caenorhabditis elegans Hypothetical
           protein D1014.6 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 503 FFWSHPPPLRCFHRPTFFSK-TVVLRGGYHCDIRSKSLNRVTYVL 372
           F W +     C HR  FFSK T V+      ++RS+S   +  +L
Sbjct: 282 FMWHNAQINDCHHRSKFFSKWTAVIDIDERIEMRSESFKTIISLL 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,806
Number of Sequences: 27780
Number of extensions: 273935
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)