Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e10
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    33   0.037
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    29   0.80 
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   1.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   4.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.2  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.2  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   4.2  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   5.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   7.4  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.4  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   9.8  

>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 659 SVVSWNDNRYAWNIWWNNGCSFTSLSEYLGIQEFRGKYFCKILNSDF 519
           S ++W D  Y+  + W N  S  S+S  L +   +  + C I+++DF
Sbjct: 528 SFLAWKDEAYSLGMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDF 574


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 439 PLHE*T*TLSCSTIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLR 588
           PLHE     S +   + W        + S +R +  Y P+  W+P YSLR
Sbjct: 26  PLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLR 75


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/91 (26%), Positives = 44/91 (48%)
 Frame = +3

Query: 105 ESLELLFDRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNL 284
           + LE  F  P +P    K + +     +E FL+ D   N +   ++   D S+   L ++
Sbjct: 578 DDLECYFRTPPKPTTLQKQQQSPSPWRSELFLS-DPDQNVLTPRHKPKFDLSKA--LSSV 634

Query: 285 SKLPEFKIATQLPKDAEFSLFLPKHQEMANE 377
           +K    + + QLP+  +FSL L  + ++ NE
Sbjct: 635 AKSNNIENSPQLPERYDFSLELGLNSQLDNE 665


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 35/136 (25%), Positives = 62/136 (45%)
 Frame = +3

Query: 84  SKMADVFESLELLFDRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASE 263
           SK  D  E+L+ L    ++P I      N V  LT+  +++D AN  + +N      A  
Sbjct: 298 SKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAILTKS-VSKD-ANIMVVINAAHCIQAMA 355

Query: 264 KIPLKNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAF 443
           K    N SK     I   L +  E    +   + +++ +  VL     ++L +L+++ A 
Sbjct: 356 KGLRSNFSKYASTSINALLERSKEKKANVI--ESLSSAMDAVLATSSLDDLAELIASFAG 413

Query: 444 ARVNLNPQLFNYCYSV 491
              N NPQ+ + C+S+
Sbjct: 414 ---NKNPQIKSSCFSL 426


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 282 LSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVNLN 461
           L +LP+ +   QL    E  L     + ++  LL      PEN L+  + T  F R++L+
Sbjct: 412 LLRLPDSQTFVQLYSSTESDLL---KEGLSRILLYFFTYFPENILKLKIDTSIFLRLDLS 468

Query: 462 PQLFNYCYS 488
           P + +  +S
Sbjct: 469 PGMLDRPFS 477


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 297 EFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDL 425
           E+++   LP+D   SL++   Q+   +  G+L  V   +++++
Sbjct: 163 EYELECTLPRDVRESLYIHDGQDRGGQPTGILFGVTLLDIEEI 205


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 147  ITPKGENNSVFQLTEQFLTEDYANNGIE 230
            +TP     +++ L+E FLT++   NG+E
Sbjct: 949  MTPSNGLRNIYPLSETFLTKEAIANGLE 976


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
 Frame = +3

Query: 249 DDASEKIPLKNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLL 428
           DD  +KIPL    K    KI+  L K + F     + Q++   +         + L    
Sbjct: 21  DDVPKKIPL--FKK----KISQALKKASTF-----ERQKLVRRIKNCRASEDADTLGRFE 69

Query: 429 STCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPSKFL-DSQVFTQAR 593
           +   FA+     +  +YCY   ++  +D RK+  +N    FP+    D+Q  T AR
Sbjct: 70  AEFEFAKQFDFTKFVDYCYYKKILKNKDFRKLLNENLHVDFPADLTEDAQRNTVAR 125


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 156  KGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSK 290
            KG++ S    T    TE Y N   E+ ++ G+   E  PL+  SK
Sbjct: 1131 KGKSLSFVSSTSTVDTEYYVNLSNEITSKGGNGIPESDPLQGSSK 1175


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +3

Query: 180 QLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFKIATQLPKDAEFSLFLPKH 359
           +LT + L +D  NN    N+RF         L   SK+  + +  +L    +  LF P +
Sbjct: 166 KLTNELLEKDIYNNSA-WNHRF-------YVLFETSKVVSWSLEEELNYLKDKILFAPDN 217

Query: 360 QEMANELLGVLMDVPENELQDLLS 431
           Q   N L GVL     ++L +L++
Sbjct: 218 QSAWNYLCGVLDKSGPSKLDNLIA 241


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 665 RRSVVSWNDNRYAWNIWWNNGCSFTSLSEYLGIQEFRGKYFCKILNSDFSGITSVHQCHR 486
           ++ V S+N NR  + +W N+      L          GK++  I+  +   ITS+H+  R
Sbjct: 487 KKIVSSFNANRVKYVVWSNDNSQAALL----------GKHYVYIVKKNLELITSIHETIR 536

Query: 485 V 483
           +
Sbjct: 537 I 537


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 283 SANSQNLKLQLNYPRTLNSHCFYLNIKK 366
           +++S+NL + +N  R L   C Y NI+K
Sbjct: 629 ASSSRNLLITMNCLRVLEKVCKYSNIRK 656


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +3

Query: 171 SVFQLTEQFLTEDYANNGIELNN-RFGDDASEKIPLKNLSKLPEFKIATQLPKDAEFSLF 347
           S F++ EQ   +      I L   R+     ++  L+   ++   K+   L  ++E +LF
Sbjct: 357 SDFKVLEQLEPDSDLKKAIILFKCRYQSSEIDQTTLRAFGEICTGKLENTLFSNSELNLF 416

Query: 348 LPKHQEMANELLGVLMDVPENELQDLLSTCAFARVNLNPQL 470
           L  +  + N+L  +L    + + Q+  + C FA+  +N  L
Sbjct: 417 LLHYLSLDNDLSNIL----KVDFQNGHNICTFAKWCINNNL 453


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 297 EFKIATQLPKDAEFSLFLPKHQE 365
           E   A+    D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 331 LNSHCFYLNIKKWQMNFLAFSWMYQRTNYKICYRHA 438
           L   C   N +K +M FLAF   +   NYK    HA
Sbjct: 146 LGKMCLLFNDEKTRM-FLAFECKFSDENYKDLISHA 180


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 375 ELLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFP 554
           EL  +L D+ E  + D   +  + R ++NP L +YC S+  + +    K  +  F++V  
Sbjct: 105 ELPCLLFDLIEKSIIDEFHS--YVRPSMNPTLSDYCKSLTGIQQCTVDKAPI--FSDVLE 160

Query: 555 SKFL 566
             F+
Sbjct: 161 ELFI 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,054
Number of Sequences: 5004
Number of extensions: 57204
Number of successful extensions: 166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)