Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e10
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           34   0.12 
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.3  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   7.7  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 132 PNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLS 287
           P++ ++  K +NN    L    +  + ANN   L+ RF +DA+  IP +NLS
Sbjct: 481 PSKVVLPKKSKNNQRRNLVTTAVKCEEANND-PLSRRFSEDANRNIPTRNLS 531


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 206 LSQKLFCELKHRIV-FALGCDERLIWTIE 123
           L  +L+CEL   +V +A  C+ER +W IE
Sbjct: 311 LRSRLYCELDDWLVSWADACEERSVWRIE 339


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 141  PLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFKIATQL 320
            PL  P  ++        QF+     +N    NNRF + ++  +P  N   +P    ATQ 
Sbjct: 2092 PLSVPLQQHPMDGTAAAQFVHNIQVDNKASSNNRFQEPSASVVPADNSKNIPNAS-ATQF 2150

Query: 321  PKD 329
              D
Sbjct: 2151 TDD 2153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,744,290
Number of Sequences: 37544
Number of extensions: 330046
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)