Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e10
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    32   0.32 
AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical ...    31   0.73 
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    29   3.0  
AL132860-27|CAB60521.1|  365|Caenorhabditis elegans Hypothetical...    29   3.0  
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z67990-4|CAA91935.1|  369|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 508 VIPEKSELRILQKYFP----LNSWIPKYSLRLVKLQPLFHQMFHAYLLSFHETTLRR 666
           V+P    +R + ++ P    L  W+ K  LRL K  PLF  M +  LLS ++  L R
Sbjct: 174 VVPTTRTIRTVDEHKPGMRDLGYWLKK--LRLHKYAPLFQDMTYRQLLSLNDNVLER 228


>AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical
           protein R02D3.3 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
 Frame = +3

Query: 276 KNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANELLGVLMDVPENELQDLLSTCAFARVN 455
           +NL KL +  +AT+L    +F     + + ++ + +G+      N +Q         R+N
Sbjct: 142 RNLEKLYQNLVATKLITPDDFWSDYYQKEGVSEDKIGINGAFLANIVQQ--EGTNGVRLN 199

Query: 456 LNPQLFNYCYSV-ALMHRRDTRKVRVKNFAEVFPSKFLDSQVFTQARE 596
           LNP++    YS    + +++   V  +   E F  KF  S  F + RE
Sbjct: 200 LNPEIIQAIYSTYPAVQKKNLELVPHEMSEENFWKKFFQSHYFHRERE 247


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 399 VPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNF 539
           + EN L+  +  C +   NL    FN C  +A        K+++K +
Sbjct: 447 IAENHLKMFIQECGYRSYNLRAYTFNGCEPLAAFETEPHCKIQLKEY 493


>AL132860-27|CAB60521.1|  365|Caenorhabditis elegans Hypothetical
           protein Y56A3A.33 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 575 LGIQEFRGKYFCKILNSDFSGITSVHQCHRVTIVEQLRVQVYSCKG 438
           L +Q    KY CK + S+ SG +S+   H    +   R   + C G
Sbjct: 298 LSLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELLATRHLFFYCHG 343


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
            protein C25G4.10 protein.
          Length = 1208

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 646  GMIIGMRGTSGGITAAVSRA*VNTWESKNLEGNTS 542
            G  + +RG  G  T   + A  + W+S NLE N++
Sbjct: 1156 GAEVEIRGLGGSATTGTAAATQSEWQSANLEANST 1190


>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical protein
            T04A11.3 protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 646  GMIIGMRGTSGGITAAVSRA*VNTWESKNLEGNTS 542
            G  + +RG  G  T   + A  + W+S NLE N++
Sbjct: 962  GAEVEIRGLGGSATTGTAAATQSEWQSANLEANST 996


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
            protein C25G4.10 protein.
          Length = 1208

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 646  GMIIGMRGTSGGITAAVSRA*VNTWESKNLEGNTS 542
            G  + +RG  G  T   + A  + W+S NLE N++
Sbjct: 1156 GAEVEIRGLGGSATTGTAAATQSEWQSANLEANST 1190


>Z67990-4|CAA91935.1|  369|Caenorhabditis elegans Hypothetical
           protein F02D10.4 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 120 LFDRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASE 263
           +++R  +   TP  + N   + TEQ+ T D ++    L+ R+GD  SE
Sbjct: 89  IYERITQAYDTPGRQENGG-RYTEQYDTVDQSSKREHLSQRYGDHVSE 135


>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 91  WLTFLKASSCCSIVQMSRSSHPRAKT---ILCFNSQN 192
           +L+FL  S+CCSI+     SH    T    LC NS N
Sbjct: 43  FLSFLSFSTCCSILGWFFLSHSTMHTYFSFLCTNSTN 79


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 404  WYIHENAKKFICHFLMFR*KQ*EFSVLG 321
            WY   + KK +CHFL  R K   F V G
Sbjct: 1157 WYNVRSVKKNLCHFLRLRHKFMHFFVKG 1184


>AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical
           protein Y52B11A.1 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 416 TRFAIDMRLCTSKPEPSVVQLLLL 487
           TRF I MR  TSK EP++ +LL L
Sbjct: 96  TRFIISMRDFTSKEEPTLSELLNL 119


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 129 DRTATRGFQKRQPFLIILKLNKK*NAFFILLYTLHR 22
           ++T TR  +KR+  L+ LK +    A F+LL  + R
Sbjct: 6   EKTQTRDAEKREKILLCLKFHLPSIAIFLLLLKMQR 41


>AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical
           protein Y57G7A.5 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 315 QLPKDAEFSLFLPKHQEMANELLGVLM-DVPENELQDLLST 434
           QLP    F   +   Q++  ++ G++M D+P  +LQD L T
Sbjct: 197 QLPNCDHFPNLMNPVQKLGEKVTGMVMKDLPAKKLQDFLDT 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,128
Number of Sequences: 27780
Number of extensions: 315008
Number of successful extensions: 898
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)