Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e09
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.0  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   2.4  
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    25   5.5  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   5.5  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   7.3  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   9.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   9.6  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    24   9.6  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    24   9.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   9.6  

>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 100 YWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHII 204
           +W EI      +G  +  NFQ K+ + SG+Q ++I
Sbjct: 229 HWIEINAGFKEVGDELSENFQRKQEILSGLQNNVI 263


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 217 WVSILSYVQHKRNEYLAEKDAVYRHYI 297
           W+S L Y+  + NE+LA KD +   Y+
Sbjct: 200 WISKLPYLAMQTNEHLAVKDELDSLYL 226


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 289 HYIELHPDDFPVPERKKIGD 348
           HY+  H D  P+P ++K+ D
Sbjct: 24  HYLSSHHDFVPLPGQEKVSD 43


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 190 QKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDF 318
           +K I ATG W + L    H R  +LA    V   YI+L P+++
Sbjct: 199 EKLIFATGAWTASLLPNDHTR--FLATGQPV--AYIKLTPEEY 237


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 124 TFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQ 243
           TF IG    LN   K  VF+ ++K    T  W+S   Y+Q
Sbjct: 552 TFSIG----LNMPAKTVVFTNVRKFDGKTFRWISGGEYIQ 587


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 429 FILHFLTFHNNSIFNLHL-TNWD 364
           F+LHF++F  NS F  H+  N+D
Sbjct: 152 FVLHFVSFLYNSSFISHIYGNYD 174


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 112 IIGVTFGIGT-GMFLNFQTKRPVFSGIQKH 198
           ++ V F   T  M +N   K  VFSG QKH
Sbjct: 639 LVKVLFATETFAMGVNMPAKSVVFSGTQKH 668


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 126 VRYWHRNVSKLPD*TASVQRYPKTYN 203
           VRYW+R  + LP     + RY + YN
Sbjct: 48  VRYWNRKQNNLP---IYIGRYTERYN 70


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 349 SHQSSYVREQGNHLGVILYNACILHP 272
           SHQ +YV+++  H G I+++  + HP
Sbjct: 491 SHQHAYVQDEIRHRGDIVWSV-LSHP 515


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -2

Query: 313 HLGVILYNACI---LHPFLLNI 257
           H+G+  Y ACI   L PFLL I
Sbjct: 310 HMGISGYEACILFELSPFLLGI 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,554
Number of Sequences: 5004
Number of extensions: 40012
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)