Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e09
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +1

Query: 235 YVQHKRNEYLAEKDAVYRHYIELHPDDFPVPERKKIGDLF 354
           Y +H+  ++L +   VY H   L  D         + D+F
Sbjct: 17  YDKHRAPKFLGQPTIVYFHVTVLSIDSINEESMTYVADIF 56


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 233 LKMLTQPPVAIICFWIPLNTGRLVWKF 153
           +KML+   +     W P +T RL++ +
Sbjct: 269 IKMLSAVVILFFICWAPFHTQRLLYVY 295


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = +1

Query: 238 VQHKRNEYLAEKDAVYRHYIELHPDDFPVPER 333
           + H   + + +  A+Y+ + E+  + FP  E+
Sbjct: 126 ILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,480
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)