Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16e04
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 31 1.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 31 1.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 31 1.1
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.5
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.5
AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical... 29 2.5
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.3
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 4.3
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 7.6
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 7.6
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +2
Query: 302 LVSAPAWSFGARFPSRAATRAPGPGSHAPERC----PPMKDPRAPAYSMGARLGFAPRRA 469
+++APA++ R AP + AP P + P PA++ + P A
Sbjct: 131 VLAAPAFAPAPILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAPAPIIAPRPVLA 190
Query: 470 GPAPNAYALKLGSGSPAYTMGARVGF 547
PA A+A + + PAY AR F
Sbjct: 191 APAIPAFAPAVPAAIPAYAPFARSAF 216
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +2
Query: 308 SAPAWSFGARFPSRAATRAPGPGSHAPERCP--PMKDPRAPAYSMGARLGFAPRRAGPAP 481
S+P +S PS + T +P +P+ P P P +P Y+ + GF+ + P
Sbjct: 1726 SSPTYS--PTSPSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTS 1782
Query: 482 NAYALKLGS---GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 631
Y+ S SP Y+ + + ++ PG + + + Y P YS
Sbjct: 1783 PTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1835
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +2
Query: 308 SAPAWSFGARFPSRAATRAPGPGSHAPERCP--PMKDPRAPAYSMGARLGFAPRRAGPAP 481
S+P +S PS + T +P +P+ P P P +P Y+ + GF+ + P
Sbjct: 1733 SSPTYS--PTSPSYSPT-SPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTS 1789
Query: 482 NAYALKLGS---GSPAYTMGARVGFQAKAKSPGPAVYFQRDANVYRTKPPMYS 631
Y+ S SP Y+ + + ++ PG + + + Y P YS
Sbjct: 1790 PTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYS 1842
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 323 SFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 436
S GAR PSRA + R P K P APAY++
Sbjct: 381 SVGARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = +2
Query: 314 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 493
PA A+ PSR R+ R P P +R APR P P A
Sbjct: 15 PAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAP 74
Query: 494 LKLGSGSPAYTMGARVGFQAKAKSPG 571
K + +P + V A A PG
Sbjct: 75 PK--TCAPPVRSASTVAAAAAAAPPG 98
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = +2
Query: 314 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 493
PA A+ PSR R+ R P P +R APR P P A
Sbjct: 144 PAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAP 203
Query: 494 LKLGSGSPAYTMGARVGFQAKAKSPG 571
K + +P + V A A PG
Sbjct: 204 PK--TCAPPVRSASTVAAAAAAAPPG 227
>AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical
protein Y47D7A.12 protein.
Length = 199
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 341 PSRAATRAPGPGSHAPERCPPMKDPRAPA-YSM-GARLGFAPRRAGPAPNAYALKLGSGS 514
P AT+ P + AP PP+ P AP+ YS A + + PAP A +GS S
Sbjct: 47 PGAYATKHSFPQNSAPVTAPPLPPPPAPSGYSSDDASVTSNVAASPPAPPTDAQIVGSSS 106
Query: 515 PAYTMG 532
+ G
Sbjct: 107 SSTNYG 112
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 344 SRAATRAPGPG--SHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSGSP 517
S+A TRAP P + AP R P K P+A + G R A P + + +P
Sbjct: 364 SKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAP 423
Query: 518 AYTMGA 535
A T A
Sbjct: 424 ASTSSA 429
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 426 AGARGSFIGGQRSGACEPGPGARVAARDGNLAPKLQAGADTSP 298
AGA G+ GGQ G C PGP VA G + GA +P
Sbjct: 92 AGA-GASSGGQCEGCCNPGPPG-VAGNPGKPGKPGKPGAPGNP 132
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 139 RPRRVPAAHDGRPPAARPIALP 204
RP +PA+ RPPA+ P+ +P
Sbjct: 101 RPPPIPASPPPRPPASEPVGIP 122
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 139 RPRRVPAAHDGRPPAARPIALP 204
RP +PA+ RPPA+ P+ +P
Sbjct: 323 RPPPIPASPPPRPPASEPVGIP 344
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +2
Query: 308 SAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAR-LGFAPRRAGPAPN 484
+APA A AP + APE P P A GA G AP A AP
Sbjct: 307 AAPAAEGAGGGAEPAGAAAPDAAAAAPEAAPAEAAPAAEGAGGGAEPAGAAPDAAAAAPE 366
Query: 485 A 487
A
Sbjct: 367 A 367
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 341 PSRAATRAPGPGSH---APERCPPMKDPRAPAYSMGARLGFAPRRAGPAP 481
P + PGP P PPM P+AP Y AP++ P P
Sbjct: 224 PPKPTFAHPGPSMGPPMGPPMGPPMGHPQAPQYGQNYGQPVAPQQYKPPP 273
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +2
Query: 308 SAPAWSF-GARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPN 484
+AP+ + G+ AA AP G E P P AP+ AP PAP+
Sbjct: 535 AAPSGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAA-PAAPSGGYSGSESSAPAAPEPAPS 593
Query: 485 AYALKLGSGSPAYTMG 532
+ G G G
Sbjct: 594 SGGYSGGGGDAGSAAG 609
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +2
Query: 308 SAPAWSF-GARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPN 484
+AP+ + G+ AA AP G E P P AP+ AP PAP+
Sbjct: 535 AAPSGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAA-PAAPSGGYSGSESSAPAAPEPAPS 593
Query: 485 AYALKLGSGSPAYTMG 532
+ G G G
Sbjct: 594 SGGYSGGGGDAGSAAG 609
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 341 PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 454
PSRA +P P +H P RCPP PR P+ + + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +2
Query: 341 PSRAATRAP--GPGSHAP----ERCPPMKDPRAPAYSMGARLGF 454
PSRA +P P +H P RCPP PR P+ + + F
Sbjct: 240 PSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDPIAF 283
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 341 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAR-LGFAPRRAGPAPN 484
P R P P + P PP P AP G++ G P R+G PN
Sbjct: 128 PPRTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSG-CPN 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,662,258
Number of Sequences: 27780
Number of extensions: 244282
Number of successful extensions: 878
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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