Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e03
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.0  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   4.0  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.3  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    25   9.3  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 358  YETKETEYPWMAALLYGGRFYCGGALISD-LYVLTAAHCTSG 480
            Y   E      + L+YGG   CG   IS    +L  AH + G
Sbjct: 1132 YRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDG 1173


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 515 STIVLK*TKLKR*TERCLTSFV-ICGIIPELTTVIS 619
           +TI+LK  +L   +  CLT FV  CG  P +  V+S
Sbjct: 189 NTIILKTAELTPLSALCLTKFVPECGFPPGVINVLS 224


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 ALLYGGRFYCGGALISDLYVLTAAHCT 474
           A +YGGR      L++D+YV+    C+
Sbjct: 44  AFVYGGRDALNAQLVNDMYVVDLNTCS 70


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 341 GASWADMKRKRRSTPGWPLFCTAEDSIVVVHLSVIC 448
           G   A+  + R +  GW + C +ED    V   + C
Sbjct: 78  GGKLAEKSKNRTAKEGWIIQCISEDGRKAVMAEINC 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,695
Number of Sequences: 5004
Number of extensions: 53340
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)