Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e02
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    30   0.32 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   2.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   5.2  
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    26   5.2  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    25   6.9  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.9  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.1  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 230 ILACALPQYKFFGVHVTLHW 289
           +LAC L  YKF+GV V   W
Sbjct: 231 VLACILEDYKFYGVFVITFW 250


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -3

Query: 540 YKYTSIQQSYLFGLQLHYQYQTSD--LNXXXXXXXKHQTILRCKYDRSSLSFQKILDFSP 367
           Y  T +++S ++ L      QTS   +            +L  + D S  S +       
Sbjct: 624 YTLTGVRRSVVYALTKFISVQTSCSWITGLTLRLCFQNVLLEQQEDISKSSCELA----- 678

Query: 366 HRIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTP 265
            R++ +++ +DG E+  + +Y H+    KV+ TP
Sbjct: 679 QRVMDILY-RDGPESFSKLLYSHIEPMLKVSITP 711


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  KTKQIIYYLLAEVYFISGVFKQEENNY 147
           KT   +YY  A+V F+SG F +  ++Y
Sbjct: 412 KTDSDLYYHRAQVRFVSGEFAEAISDY 438


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +1

Query: 154 NIKH---NGWNKRFGVVGIRGFNWNDICHTSLCLTTIQIFWG 270
           N+KH     W   F +    G  WN++    +   +++ FWG
Sbjct: 35  NLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWG 76


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 172 WNKRFGVVGIRGFNWNDICHTSLCLTTIQIFWG 270
           W   F     +G  W+D+    +   T++ FWG
Sbjct: 70  WTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWG 102


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = -2

Query: 604 NWRILSRFYNMVTYYT---KLNNR 542
           NW I+S+FYNM+       KL NR
Sbjct: 230 NWHIVSQFYNMLELEAARQKLENR 253


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  LLAEVYFISGVFKQEENNYT*NIKHNGWNKRFG 189
           ++A   F+S   K E N++  +     W +RFG
Sbjct: 166 MMAAAKFLSQYIKDESNSFVISSDFCHWGRRFG 198


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 436 PNYLTLQIRSIVPFFSKDSRFLTTSHNR 353
           PN L      +   FS+D+R+L +SH R
Sbjct: 183 PNPLQFISNFLSNLFSRDTRYLKSSHGR 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,422
Number of Sequences: 5004
Number of extensions: 48718
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)