Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16e02
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical pr...    45   4e-05
U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U64441-1|AAB06457.1|  549|Caenorhabditis elegans nonsense-mediat...    30   1.6  
U64440-1|AAB06456.1|  549|Caenorhabditis elegans nonsense-mediat...    30   1.6  
AF003141-6|AAK21489.1|  549|Caenorhabditis elegans Suppressor wi...    30   1.6  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U23450-3|AAN39678.1|  132|Caenorhabditis elegans Hypothetical
           protein C30B5.2a protein.
          Length = 132

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = +2

Query: 167 MAGIKGLVSLAFAGSIGMTFVILACALPQY 256
           M G++ + +LAFAG +G+TF++L CALP+Y
Sbjct: 1   MGGVRAVAALAFAGVVGLTFLVLGCALPRY 30



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 271 ACYLTLAGNVIVYLTILGFFTIFDMDDS 354
           AC+L   G+VI++ TI+ +F +   DDS
Sbjct: 97  ACFLVNTGSVIMFGTIIAYFYLHRDDDS 124


>U23450-4|AAN39679.1|  130|Caenorhabditis elegans Hypothetical
           protein C30B5.2b protein.
          Length = 130

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +2

Query: 167 MAGIKGLVSLAFAGSIGMTFVILACALPQ 253
           M G++ + +LAFAG +G+TF++L CALP+
Sbjct: 1   MGGVRAVAALAFAGVVGLTFLVLGCALPR 29



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 271 ACYLTLAGNVIVYLTILGFFTIFDMDDS 354
           AC+L   G+VI++ TI+ +F +   DDS
Sbjct: 95  ACFLVNTGSVIMFGTIIAYFYLHRDDDS 122


>U64441-1|AAB06457.1|  549|Caenorhabditis elegans nonsense-mediated
           mRNA decay proteinprotein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 615 KKS*TGEYYLDFIIWLLTIQSSTIDYKYTSIQ 520
           +K  T +  +DF+IW L  +S  +DY+ T I+
Sbjct: 190 QKESTDKLMVDFVIWALNEKSKRMDYQMTGIK 221


>U64440-1|AAB06456.1|  549|Caenorhabditis elegans nonsense-mediated
           mRNA decay proteinprotein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 615 KKS*TGEYYLDFIIWLLTIQSSTIDYKYTSIQ 520
           +K  T +  +DF+IW L  +S  +DY+ T I+
Sbjct: 190 QKESTDKLMVDFVIWALNEKSKRMDYQMTGIK 221


>AF003141-6|AAK21489.1|  549|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 5 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 615 KKS*TGEYYLDFIIWLLTIQSSTIDYKYTSIQ 520
           +K  T +  +DF+IW L  +S  +DY+ T I+
Sbjct: 190 QKESTDKLMVDFVIWALNEKSKRMDYQMTGIK 221


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
            protein C36B7.5a protein.
          Length = 1121

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 382  SRFLTTSHNRSRPCQRW*RNPRSSDIRSRYRPV*GNMHPKKFVLW*GTS*YDKCHSN*TR 203
            S + T +  R R      R P  S  +  Y P+   +   +   W   S + +CH N TR
Sbjct: 907  SFYNTAAPQRDRTSYNSNRRPSHSRSQDEYVPIDSVIGRVQVCHWSKWSEWSRCHDNSTR 966

Query: 202  ECQR 191
            E +R
Sbjct: 967  ERKR 970


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,297,340
Number of Sequences: 27780
Number of extensions: 265022
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)