Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d24
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         29   3.0  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   3.9  
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    27   9.0  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    27   9.0  
03_05_0046 + 20235380-20235566,20235760-20235998                       27   9.0  

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 85  FLLHLRIQPDVRNHPRATRACHTAHN 162
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 43  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 183
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 226 ARNLIAVIVTEIIAPLAKTETPHRPLVVRIQPTSPL 333
           +R  + VI  E  AP+  T + H  L++R   TSP+
Sbjct: 196 SRQKVDVINLETTAPVVNTGSQHEALILRGTRTSPI 231


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 109 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKF 5
           V  EDV R  A  N     G + C+F+  Y   KF
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKF 482


>03_05_0046 + 20235380-20235566,20235760-20235998
          Length = 141

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 448 GAPARWQRESVG 483
           GAP+RWQR SVG
Sbjct: 90  GAPSRWQRRSVG 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,452,192
Number of Sequences: 37544
Number of extensions: 305717
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)