Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16d22
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.24
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 30 0.24
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.43
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 4.0
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 5.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 6.9
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 25 6.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/81 (22%), Positives = 40/81 (49%)
Frame = +1
Query: 379 KLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQ 558
++ A+ +NE+L +K + +P N+ + P+A+ +Q G+ + ++
Sbjct: 1232 RIKAEAQRRMNERLAALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQIQPGK-QASAVSS 1290
Query: 559 NIPSVNNPAKIGMGPEIINMV 621
N+P+V+ A I P ++ V
Sbjct: 1291 NVPAVS--ASISTPPAVVPTV 1309
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 30.3 bits (65), Expect = 0.24
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 370 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTIS 468
NP ++ D YN L++ V K +HD+NT+S
Sbjct: 141 NPSRILLD-YNRAGTPLLEIVTKPCFHDVNTVS 172
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 457 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 555
+T++P +T ++ + GLP S TPL+N T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNST 644
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 457 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 555
++I P +T ++ + GLP S TPL+N T
Sbjct: 674 SSIVPTSTFTSSGFNTTSGLPTSSASTPLSNST 706
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 457 NTISPANTVMNNPIASQIGLPLQSGQTPLNN 549
+T++P +T ++ + GLP S TPL+N
Sbjct: 705 STVAPTSTFTSSGFNTTSGLPTSSVSTPLSN 735
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 457 NTISPANTVMNNPIASQIGLPLQSGQTPLNN 549
+T++P +T ++ + GLP S TP +N
Sbjct: 643 STVAPTSTFTSSGFNTTSGLPTSSASTPSSN 673
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 193 YYQN*KRFSPYSHNQHFLIDS*HYPIHLKFFVYLRP 86
Y N FSPY H +H I S +YP + VY P
Sbjct: 470 YESNNSSFSPYYHKRHRQI-SPYYPTSSVYGVYESP 504
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Frame = +1
Query: 325 PAGSSHVNRPCFGQCNPPKLYAD------TYNYLNEKLMQPVVKEVYHDLNTIS 468
P G N+PCF + +++ T N K + P EV DLNT S
Sbjct: 368 PGGLRRANKPCFNKETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLADLNTAS 421
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 412 HLNSYKCQHKVLVDCIDQSKVYLHD*SLQD 323
H+ K H + + C+D + YL + SL+D
Sbjct: 356 HMEKVKSLHSLSIICLDMAISYLMEFSLED 385
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 418 LMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNIPSVNNPAKIGM 597
L P + +L T S +++++ NP+ P N + + PSV NP +
Sbjct: 315 LNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSSPSVTNPF-FDV 373
Query: 598 GPEIIN-MVMGSSG 636
G N +MGS+G
Sbjct: 374 GSSTQNASLMGSTG 387
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 406 LNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQS--GQTPLNNLTQNIPSVNN 579
L + P V + +L N +MN+P + + QS G L++L N P + N
Sbjct: 234 LGSLMNNPAVMNMARNLMQSGALNNIMNDPNIANMARNFQSGGGMPDLSSLANN-PQLQN 292
Query: 580 PAK 588
A+
Sbjct: 293 LAR 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,358
Number of Sequences: 5004
Number of extensions: 47419
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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