Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d22
         (636 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70697-1|CAA50029.1|  630|Homo sapiens serotonin transporter pro...    31   3.4  
L05568-1|AAA35492.1|  630|Homo sapiens Na+/Cl- dependent seroton...    31   3.4  
BC069484-1|AAH69484.1|  630|Homo sapiens solute carrier family 6...    31   3.4  
AY902473-1|AAW80933.1|  630|Homo sapiens serotonin transporter p...    31   3.4  

>X70697-1|CAA50029.1|  630|Homo sapiens serotonin transporter
           protein.
          Length = 630

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCPDCNG 516
           LLP T++ I G IP+F     LG +    C+ ++  +CP   G
Sbjct: 118 LLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKG 160


>L05568-1|AAA35492.1|  630|Homo sapiens Na+/Cl- dependent serotonin
           transporter protein.
          Length = 630

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCPDCNG 516
           LLP T++ I G IP+F     LG +    C+ ++  +CP   G
Sbjct: 118 LLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKG 160


>BC069484-1|AAH69484.1|  630|Homo sapiens solute carrier family 6
           member 4 protein.
          Length = 630

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCPDCNG 516
           LLP T++ I G IP+F     LG +    C+ ++  +CP   G
Sbjct: 118 LLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKG 160


>AY902473-1|AAW80933.1|  630|Homo sapiens serotonin transporter
           protein.
          Length = 630

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCPDCNG 516
           LLP T++ I G IP+F     LG +    C+ ++  +CP   G
Sbjct: 118 LLPYTIMAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKG 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,034,298
Number of Sequences: 237096
Number of extensions: 1644062
Number of successful extensions: 2596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2596
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)