Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d22
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    28   6.4  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    28   6.4  
U40955-1|AAA81747.3|  233|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 385 YADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNI 564
           Y+    +LN+       K V+ +    S   +   NP+  Q+ LP      P  +LT   
Sbjct: 265 YSSFNRHLNKNSTNSKPKSVHSESRDSSKQRSTTTNPVQKQVDLP-----KPKADLTTKH 319

Query: 565 PSVNNPAKI 591
            S N+P K+
Sbjct: 320 SSSNSPHKL 328


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCP 528
           L+P  ++++ G +P+F     LG F    CV ++  VCP
Sbjct: 139 LIPYFIMLMIGGLPMFYMELVLGQFHRSGCVSIWRKVCP 177


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 632 LLPITMLIISGPIPIFAGLFTLGMF----CVKLFNGVCP 528
           L+P  ++++ G +P+F     LG F    CV ++  VCP
Sbjct: 139 LIPYFIMLMIGGLPMFYMELVLGQFHRSGCVSIWRKVCP 177


>U40955-1|AAA81747.3|  233|Caenorhabditis elegans Hypothetical
           protein F48B9.5 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 343 VNRPCFGQCNPPKLYADTYNYLN-EKLMQPVVKEVYHDLNTISPA 474
           ++ P      P  L  D   +LN +    P+ K VYH  ++I+PA
Sbjct: 1   MDEPVIDTSTPESLERDFMAWLNSDPTNTPIRKSVYHSSDSIAPA 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,509
Number of Sequences: 27780
Number of extensions: 263259
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)