Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d20
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    31   1.3  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    29   3.8  
04_04_1675 - 35280705-35281493,35281544-35281795                       29   5.1  
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683...    28   8.8  
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841     28   8.8  
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150...    28   8.8  

>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 265 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 444
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 445 LQQTMP 462
           L++ +P
Sbjct: 320 LEEVLP 325


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 510  F*NFWQFLKKQMEDWSWHSLLKYTKQLFS---LSTNSHSLPEMFDSSFKITCSQQL 352
            F N+   LKK+ +   WHS+L+  +++ +   +   +H +P +      +TCS  L
Sbjct: 2448 FENYGNILKKESDHPIWHSILECYREIVAYHKIDVVAHPIPLLSMRLLDMTCSVTL 2503


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 172 CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 306
           C +FD + RR+D  F KKL    LN  ++ +R + L    PD  D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256


>05_06_0060 -
           25266735-25267210,25267323-25267569,25267650-25268345,
           25268457-25268709,25268786-25269261,25270760-25270909
          Length = 765

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 657 CLQKTDKNKT----KINYYGHHVLLSSLQIHNFLFDIFFLHYVAP 535
           C Q+  K K+    KI   G++VLLS + ++ F   + FLH + P
Sbjct: 550 CFQQVTKVKSRIVLKILRLGYNVLLSDVDVYWFHNPVSFLHSLGP 594


>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
          Length = 534

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 290 GTGPPRVRDLEAFCCAFSLRSLNFFLNSGSLRLCWSKY 177
           G G P +R+L  +C A   R L+F L +  +  C   Y
Sbjct: 224 GAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIY 261


>01_01_0176 +
           1507592-1507678,1507803-1507931,1508076-1508252,
           1508630-1508770,1509045-1509233,1509311-1509382,
           1509483-1509537,1509987-1510015,1510182-1510396,
           1510987-1511151,1511262-1511646
          Length = 547

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 513 PPILDEGEEQRNAGRRCRIKNCEFEEMKVKHGGHNN 620
           PP L + E +R   RR R+++   +E   KH GHN+
Sbjct: 452 PPSLHDDEHRR---RRRRLRSEAHDERGAKHPGHNS 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,207
Number of Sequences: 37544
Number of extensions: 364112
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)