Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d20
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 133 IAVGIAGTLFLGYCVYF 183
           IAVG +G +F GY + F
Sbjct: 235 IAVGASGNVFAGYLLVF 251


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 184 DQQRRKDPLFKKKLRERRLN 243
           ++QR  D  F  K+R+ RLN
Sbjct: 477 EEQRNDDKPFLIKIRQYRLN 496


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 184 DQQRRKDPLFKKKLRERRLN 243
           ++QR  D  F  K+R+ RLN
Sbjct: 477 EEQRNDDKPFLIKIRQYRLN 496


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 FYFHLFKFTIFYSTSSSCITLLLAFI 525
           FY  + + T+FY+ +    T+L++F+
Sbjct: 225 FYIIIRRKTLFYTVNLILPTVLISFL 250


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 669 YE*VCLQKTDKNKT 628
           YE VC+ KTD N++
Sbjct: 604 YEDVCVLKTDTNQS 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,896
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)