Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d19
         (647 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009265-1|AAH09265.1|  368|Homo sapiens polymerase (DNA-directe...   233   4e-61
BC000655-1|AAH00655.1|  368|Homo sapiens polymerase (DNA-directe...   233   4e-61
AF179891-1|AAK92018.1|  368|Homo sapiens putative DNA polymerase...   233   4e-61

>BC009265-1|AAH09265.1|  368|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 2 protein.
          Length = 368

 Score =  233 bits (570), Expect = 4e-61
 Identities = 105/173 (60%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
 Frame = +1

Query: 133 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 312
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+ + +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 313 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 486
              S     KEVKG+THT+YQVLID RD P+I  R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174

Query: 487 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPW 645
           YV+H+DI+PY S ++VP+QHELF++FL+++  K PPF+A+ETLRAWQ+KNHPW
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPW 227


>BC000655-1|AAH00655.1|  368|Homo sapiens polymerase (DNA-directed),
           delta interacting protein 2 protein.
          Length = 368

 Score =  233 bits (570), Expect = 4e-61
 Identities = 105/173 (60%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
 Frame = +1

Query: 133 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 312
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+ + +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 313 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 486
              S     KEVKG+THT+YQVLID RD P+I  R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174

Query: 487 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPW 645
           YV+H+DI+PY S ++VP+QHELF++FL+++  K PPF+A+ETLRAWQ+KNHPW
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPW 227


>AF179891-1|AAK92018.1|  368|Homo sapiens putative DNA polymerase
           delta p38 subunit protein.
          Length = 368

 Score =  233 bits (570), Expect = 4e-61
 Identities = 105/173 (60%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
 Frame = +1

Query: 133 LAEVGKLESPKTSGKYDTGQLILHKVFGYRGVILFPWLARVYDRDATNKKESPDNSTSET 312
           L  VG  E PK +GKY+TGQL LH +FGYRGV+LFPW AR+YDRD  +   +P+ + +  
Sbjct: 62  LETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASA--APEKAENPA 119

Query: 313 SGDSLTNAGKEVKGRTHTFYQVLIDTRDAPYI--RAQTEAVTFLGNQESSRSLYAIPGLD 486
              S     KEVKG+THT+YQVLID RD P+I  R+QTEAVTFL N + SR+LYAIPGLD
Sbjct: 120 GHGS-----KEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLD 174

Query: 487 YVAHDDIIPYASVERVPLQHELFDKFLMHNPDKDPPFIAQETLRAWQKKNHPW 645
           YV+H+DI+PY S ++VP+QHELF++FL+++  K PPF+A+ETLRAWQ+KNHPW
Sbjct: 175 YVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPW 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,805,864
Number of Sequences: 237096
Number of extensions: 2072489
Number of successful extensions: 3828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3821
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)