Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d17
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    28   1.4  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   1.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   10.0 
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   10.0 

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 525  KLIT*TFSVFEVRRR*IKLMIFKFN*SYIPWWHTQRKI 638
            K+IT TFS+  +R + + L+I++     +  W+ +R I
Sbjct: 967  KVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYRERTI 1004


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 138 LKPPRTILTRISI-RQSNYTWYIISCFNSTYMYT-HINIYIV 257
           LK   T + R++I   ++Y   I+S  +STY+YT H ++Y+V
Sbjct: 24  LKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHEDLYVV 65


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 195 WYIISCFNSTYMYTHINIYIVFHALPPFLRLNNSLNNCIA 314
           W +I   +    Y    IY  F  L PF+ + ++  NC A
Sbjct: 525 WLMIKLLSRRISYKRSLIYSSFWILNPFVAIISTRGNCEA 564


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 405 WVLVSRSCVAHCRNAVETGASTEFV 479
           W++VS SC+  C N +    +  F+
Sbjct: 426 WIIVSESCIILCDNMLSMQPADVFI 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,894
Number of Sequences: 5004
Number of extensions: 54214
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)