Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d17
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   2.6  
03_05_0543 - 25404630-25405408,25405461-25405605                       28   5.9  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = -2

Query: 577 FIYRRLTSNTENVYVISLGLRSIYVPQYYRLFNTNSVLAPVSTALRQCATQLRLTSTHGT 398
           F+YR L +   +  V +L LRS    +Y  +++ + V   +S+A+++ A  + L      
Sbjct: 134 FVYRLLLAREVSAPVDTLRLRSSNGEEYAEMYDNDDVNMWISSAIKRNARVIHLNGHRED 193

Query: 397 KRCKIEFQKYTSSNYTVAK 341
               +E   + S    + K
Sbjct: 194 DDLVLEHTAFVSQRLKILK 212


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 405 TERNDVRLNFKNTRLQIIQ*LNASVKTLGCTRY--NYLMNCSTGGMGEG 265
           T+   +R     +R Q++    A+V  LG T Y  N L N +TGG G G
Sbjct: 250 TDMAQLRRPASASRRQLVNVAVAAVVLLGITLYVWNTLRNAATGGGGNG 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,772
Number of Sequences: 37544
Number of extensions: 291580
Number of successful extensions: 588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)