Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d17
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.50 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.50 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.66 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.87 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 529 SLGLRSIYVPQYYR-LFNTNSVLAPVSTALRQCATQLRLTSTHGTKRCKIEFQ 374
           S+  +++ +P +Y  L+   ++L  V   L+       L   H T+ CK++ +
Sbjct: 130 SVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKLQME 182



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 120 PQLYKKLKPPR 152
           P+LY K++PP+
Sbjct: 45  PKLYDKMRPPK 55


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 391 CKIEFQKYTSSNYTVAKCEC*NIRLY 314
           C    + Y+S+N T+ KC+  N R Y
Sbjct: 656 CSEISESYSSNNKTLCKCDAQNCRRY 681


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 118 CFMKNKRFFYHGHQHQCHNMVQSFGDNIE 32
           CFMK   + Y G Q    ++ Q+ GD +E
Sbjct: 159 CFMKFGSWTYDGIQIDLKHINQNMGDKVE 187


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 213 NMKLYTKCSYFDVY*YALILFLVAS 139
           N+ L TKC Y   Y Y  +L LVA+
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVAT 652


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 251 HRLSRPSPIPPVEQFIK*LYRVQPNVLTLAFSY 349
           HR  RP PI      I+ +Y  +P  +   F Y
Sbjct: 632 HRAIRPEPIDAQFDIIQNIYIPEPQDIENIFKY 664


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 118 CFMKNKRFFYHGHQHQCHNMVQSFGDNIETEQI 20
           C MK   + Y+G Q    +M Q  G N+  + I
Sbjct: 172 CIMKFGSWTYNGAQVDLKHMKQEAGSNLVAKGI 204


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 91  YHGHQHQCHNMVQSFGDNIETEQIYSLVS 5
           Y G +   HN+V   G+N  T+++ +++S
Sbjct: 355 YVGRKRPMHNVVYRPGENPVTQRLPAVLS 383


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 99  RLFFIKHPQLYKKLK---PPRTILTRISIRQSNY 191
           RLF+ +   LYKK+K   PP ++  ++  R+  Y
Sbjct: 281 RLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFY 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,931
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)