Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16d07
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 31 0.15
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.62
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 29 0.82
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 28 1.1
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 27 2.5
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 3.3
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 4.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 5.8
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 25 7.6
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 506 WTKDKPEISNKTYHFYQIFNETMQCIEDNINPK----ENSTKVCENCMQSYIQLNNYYE 670
W +P I T F+Q+ NET ++D ++ EN+T V EN +++ +YE
Sbjct: 168 WLSMEPFI---TPSFFQVKNETAYLVKDELSLHAYLGENATSVIENHYNTFVTKQTFYE 223
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.1 bits (62), Expect = 0.62
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 341 YVKFRESYKNLLQTN-LNGTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFNWTKD 517
Y+K+R ++K N L+ + E + +D+ + +L + K C DC W
Sbjct: 107 YLKYRRTHKKESDENQLSSSDLEKTY--YDKEQEILGCSHYMRNC--KVQCFDCHEWYTC 162
Query: 518 KPEISNKTYHFYQI-FNETMQC-IEDNINPKENSTKVCENCMQSY 646
+ ++ H + E M C I + P K C+NCM Y
Sbjct: 163 RHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRY 207
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 28.7 bits (61), Expect = 0.82
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +2
Query: 332 IDHYVKFRESY------KNLLQTNLNGTSCETIFISHDRLEVVLNYHDNILAIWN 478
+D Y++ E Y K LL + + HD L+V+LN+HD I ++N
Sbjct: 683 LDTYIEAHEKYVTSITHKGLLGGGKSRNEDSFLHQLHDILKVILNFHDAIELLYN 737
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 521 PEISNKTYHFYQIFNETMQCIEDNINPKENSTKVCEN 631
PE N H +F +QC+E+N ENST + E+
Sbjct: 97 PETKN---HIKSVFAPVIQCVEENDFEFENSTIIIED 130
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 176 VTSYKLKYNGEGYLFANPSICTKLLDEFADSASNFTK-CSIKHARPIRLCEKCIDHYVKF 352
+T+ LKY+ YL PSI + ++ A ++ F+ C + + C + HY F
Sbjct: 250 ITALLLKYS---YLRRYPSIESCIILLMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFF 306
Query: 353 RESYKNLLQT 382
SYK L T
Sbjct: 307 NMSYKAKLST 316
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 233 ICTKLLDEFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQTN 385
+ + L+DE A+ + + S+ +R RL E D Y+K E ++L++T+
Sbjct: 116 VISSLIDEDANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTEDLIRTD 166
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 332 IDHYVKFRESYKNLLQTNLNGTSCETIFISHDRLEVVLNYHDN-ILAIWNK 481
I HY RE+Y+ L+T G S ET+ I H +L + N ++IW +
Sbjct: 552 IMHYWVQRENYEKALETLNEGVSQETL-IQH--ATALLTHRPNETVSIWER 599
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 392 GTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFN 505
G SC + S D ++ DN L +W+ N N C N
Sbjct: 300 GISC--LSFSQDGNYLLSRGEDNALRVWDLRNSNKCVN 335
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +2
Query: 254 EFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQTNLNGTSCETIFISHDRL 433
EF +A C + +RL K + K E + LL TNL +S F +
Sbjct: 102 EFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEV 161
Query: 434 EVVLNYHDN 460
L+Y N
Sbjct: 162 LESLHYQGN 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,655
Number of Sequences: 5004
Number of extensions: 58472
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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