Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d06
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   157   1e-39
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   155   6e-39
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.098
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   1.2  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.6  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   4.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   6.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.5  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  157 bits (381), Expect = 1e-39
 Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
 Frame = +1

Query: 157 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 336
           M KI+KPGKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 337 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 510
           +I +RS++KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FEE
Sbjct: 61  RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120

Query: 511 RYKSGKNKWFFQKLRF 558
           +Y+SGK+ WFF  LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  155 bits (375), Expect = 6e-39
 Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
 Frame = +1

Query: 157 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 336
           M KI+KPGKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60

Query: 337 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 510
           +I KRS++KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FEE
Sbjct: 61  RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120

Query: 511 RYKSGKNKWFFQKLRF 558
           +Y++GK+ WFF  LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.098
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 148 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 249
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 328 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 462
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 163 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 246
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 263 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 174
           L E+P + F  T+    AY P   S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 357  LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 244
            LGP+ +    + L HFP    DT + S P    GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 459 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 358
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 421 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 555
           +SF  F   D K+  K K        R  E Y   +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 KVHKRMGKNKIHKRSKIKPFVKVV 381
           K+ KR+G   I   SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 415 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 531
           + F       K L DP+ R+K  F ++   + +Y+  KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 415 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 513
           VD++ E+F      DP+     + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,904
Number of Sequences: 5004
Number of extensions: 51122
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)