Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d03
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    76   5e-15
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    73   5e-14
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    57   3e-09
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    56   3e-09
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    36   0.005
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    35   0.012
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    32   0.065
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   3.2  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   4.3  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
 Frame = -1

Query: 603  LTRQLLIGYRVYL*N--LSSIF-RTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLV 433
            L R LL   R+ L +   +S+   TD  +QQTIR+ F   T+LT+AHR+NT+MDSDR+LV
Sbjct: 1373 LARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILV 1432

Query: 432  MSTGEVAEFDHPYILMSDPNSHLSSMVRETG 340
            +  G+V EFD    L+ + +S   S+ +E+G
Sbjct: 1433 LDHGKVVEFDATKKLLENKDSMFYSLAKESG 1463


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
 Frame = -1

Query: 645  EATANVDP-Q*VLYQLTRQLLIGYRVYL*NLSSI---FRTDNFIQQTIRRAFASCTVLTI 478
            E  AN+   Q  L  LTR LL   RV L + ++      TD  +Q+TIR  F   T+LTI
Sbjct: 1356 EGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILTI 1415

Query: 477  AHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETG 340
            AHR+NT+MDS+R+LV+  G+V EFD    L+ +  S   S+ +E+G
Sbjct: 1416 AHRINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSLAKESG 1461


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = -1

Query: 537  DNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSS 358
            D  IQ+T+R AF   T+L IAHRL TI+D D+V+V+  G + E+  P +L  + N H   
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHN-NGHFRR 1449

Query: 357  MVRETG 340
            M   +G
Sbjct: 1450 MCDGSG 1455


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = -1

Query: 540  TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHP 397
            TD  IQQ +R AF   TVL IAHR+ TI+D D+VLV+ +G+  EF  P
Sbjct: 1359 TDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSP 1406


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 540  TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 409
            ++  +Q+ +  A    T + IAHRL++I D+D + V   G +AE
Sbjct: 1293 SEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAE 1336


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = -1

Query: 498 SCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVR 349
           S T +TIAH+L TI  +D+++V+  G+V E    +  +S P ++   ++R
Sbjct: 670 SMTTITIAHKLATIRRADQIIVVGDGKVLE-QGSFERLSRPGTNFYKLMR 718


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 32.3 bits (70), Expect = 0.065
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = -1

Query: 528  IQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 409
            +++TI+    SCTVL I H+ + +  +DR++VM +G V E
Sbjct: 1274 LEKTIQNL--SCTVLIITHQPSLMKLADRIIVMDSGIVKE 1311



 Score = 26.6 bits (56), Expect(2) = 0.40
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 540 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 409
           T N +   IR      T L I H ++ I + + VLV+  G + +
Sbjct: 605 TKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLIQ 648



 Score = 21.4 bits (43), Expect(2) = 0.40
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 663 KILIMDEATANVDP 622
           +ILI+DE T+ +DP
Sbjct: 590 EILILDEPTSALDP 603


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 231 SLTYPSLCIGVSNVSVFDYFGNTHLWQLQITL 326
           S++ PS+C  ++     DY   TH+ Q+ I+L
Sbjct: 609 SISTPSVCTSLTFAPTGDYLATTHVDQVGISL 640


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 172 VANFRNSSATTHFKFGYLAKRNN 104
           V   +N S T+ FK G+L K+NN
Sbjct: 213 VQQIKNGSKTSLFKKGFLFKKNN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,373
Number of Sequences: 5004
Number of extensions: 56491
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)